CuGenDBv2

Gene ID	IVF0018202
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Genome location	chr04:22951682..22952059
RNA-Seq Expression	IVF0018202
Synteny	IVF0018202
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048380.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.11e-88

100

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.84e-83

97.6

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAW+LQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

KAA0057574.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.67e-85

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVE+PLSEGKSAWVLQSSIHNEA NSG+ALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

KAA0061098.1 putative mitochondrial protein [Cucumis melo var. makuwa]

5.00e-80

92.8

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQ REDGLSLIVE PWAG FADHWPRLDNNSVL RLSVEIPLSEGKSAWVLQS IH+EAPNSGRALT GQRLIEGQT W
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

TYK20969.1 hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]

4.41e-79

94.4

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFA+HWPRLDNNSVLPRLSVE+ LSEGKSAWVLQSSIH EAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCF DCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TFC8 PMD domain-containing protein

8.7e-66

96.8

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE  WAGAFADHWPRLDNNSVLPRLSVE+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

A0A5A7TX42 Uncharacterized protein

6.0e-67

97.6

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVE+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

A0A5A7TZ08 Putative mitochondrial protein

1.4e-68

100

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

A0A5A7U8L3 PMD domain-containing protein

3.0e-66

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLI+E PWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAW+LQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GT+TKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

A0A5A7UET3 Putative mitochondrial protein

6.0e-67

97.6

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Query:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW
        MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAW+LQSSIHNEAPNSGRALTLGQRLIEGQTRW
Subjt:  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW

Query:  GTVTKVPGEFCFTDCYWEWLELVVG
        GTVTKVPGEFCFTDCYWEWLELVVG
Subjt:  GTVTKVPGEFCFTDCYWEWLELVVG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTTACTTCACGGAACGATTCTTGTCTGAAGTTCGACATCTCGTAATACTTTCTGACAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGACGCCATG
GGCTGGTGCTTTTGCAGATCATTGGCCACGCTTAGATAATAACTCAGTTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAAT
CTTCTATCCACAATGAGGCTCCTAATTCTGGTAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTT
TGCTTTACTGACTGTTATTGGGAGTGGTTGGAGCTTGTAGTTGGTTGA

mRNA sequence

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Protein sequence

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MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEF
CFTDCYWEWLELVVG

IVF0018202 (gene) of Melon (IVF77) v1 genome