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IVF0018303 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018303
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:3594212..3594618
RNA-Seq ExpressionIVF0018303
SyntenyIVF0018303
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]2.93e-1636.57Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSN---------------VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQAT----------
        MEFP M S  MNMS EN++G + GRSND R+GSN               +I E M+   DQLR IAEW +     ED +  +VI  ++A           
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSN---------------VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQAT----------

Query:  ----LSSKLSIMKAFLDLPDDMKLAYNNVILHDN
            ++ K+S+M++F+ +PD MK  Y  ++L  N
Subjt:  ----LSSKLSIMKAFLDLPDDMKLAYNNVILHDN

KAA0054984.1 retrotransposon protein [Cucumis melo var. makuwa]9.26e-3385.9Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSS
        MEFPTMYSYGMNMSLENIIGAQL          +VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSS
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSS

KAA0056454.1 retrotransposon protein [Cucumis melo var. makuwa]9.51e-3452.59Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQAT----------
        MEF  MY+ GMN+S E+++GA+ GR NDCRL S               NVI EA+D  ND LRAIAEW K+TRHEED +R+EVIRQLQ            
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQAT----------

Query:  ----LSSKLSIMKAFLDLPDDMKLAYNNVILHDNP
            +  KL+I+KAFLDL DD+KLAY N ILH+NP
Subjt:  ----LSSKLSIMKAFLDLPDDMKLAYNNVILHDNP

TYK05020.1 retrotransposon protein [Cucumis melo var. makuwa]8.47e-1543.4Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSSKLSIMKAFLDLPDDMKLAYNNV
        MEFPTMY+ GMNMS E+++GA+LG+S DC             V D  R +                         ++ KL++MKAFLDL D+MKLAY NV
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSSKLSIMKAFLDLPDDMKLAYNNV

Query:  ILHDNP
        ILHDNP
Subjt:  ILHDNP

TYK15318.1 retrotransposon protein [Cucumis melo var. makuwa]1.18e-1443.75Show/hide
Query:  MNMSLENIIGAQLGRSNDCRLGSN---------------VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQ--------------ATLSSKLS
        +NMS E+++GAQ  RS+DCR GS+               VI + M  VND LRAI +W K+ R EED  R+EVIRQLQ                ++  L 
Subjt:  MNMSLENIIGAQLGRSNDCRLGSN---------------VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQ--------------ATLSSKLS

Query:  IMKAFLDLPDDM
        IMKAFLDL  DM
Subjt:  IMKAFLDLPDDM

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein4.4e-1035.56Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA-----------
        MEFP M S  MNMS ++++G + GRS+D R GS               ++I E M+   DQLR IAEW K     ED +  +VI  ++A           
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA-----------

Query:  ---TLSSKLSIMKAFLDLPDDMKLAYNNVILHDNP
            ++ K+S+M++F+ +PD MK AY  V+L  +P
Subjt:  ---TLSSKLSIMKAFLDLPDDMKLAYNNVILHDNP

A0A5A7UIJ0 Retrotransposon protein2.8e-2585.9Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSS
        MEFPTMYSYGMNMSLENIIGAQL          +VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSS
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSS

A0A5A7UMN4 Retrotransposon protein3.7e-2552.59Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA-----------
        MEF  MY+ GMN+S E+++GA+ GR NDCRL S               NVI EA+D  ND LRAIAEW K+TRHEED +R+EVIRQLQ            
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA-----------

Query:  ---TLSSKLSIMKAFLDLPDDMKLAYNNVILHDNP
            +  KL+I+KAFLDL DD+KLAY N ILH+NP
Subjt:  ---TLSSKLSIMKAFLDLPDDMKLAYNNVILHDNP

A0A5A7VBC5 Retrotransposon protein2.6e-1034.59Show/hide
Query:  EFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA------------
        +FP MYS G+NMS ++++G +  R ++ R  S               +++  A++  N+QL  IAEW  + R      RQEV+RQL+A            
Subjt:  EFPTMYSYGMNMSLENIIGAQLGRSNDCRLGS---------------NVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA------------

Query:  --TLSSKLSIMKAFLDLPDDMKLAYNNVILHDN
           L   +  MKAFLD+PD+MK +Y N+IL +N
Subjt:  --TLSSKLSIMKAFLDLPDDMKLAYNNVILHDN

A0A5D3B9T0 Retrotransposon protein4.7e-1236.57Show/hide
Query:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSN---------------VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA-----------
        MEFP M S  MNMS EN++G + GRSND R+GSN               +I E M+   DQLR IAEW +     ED +  +VI  ++A           
Subjt:  MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSN---------------VIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQA-----------

Query:  ---TLSSKLSIMKAFLDLPDDMKLAYNNVILHDN
            ++ K+S+M++F+ +PD MK  Y  ++L  N
Subjt:  ---TLSSKLSIMKAFLDLPDDMKLAYNNVILHDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCCCTACAATGTATAGCTACGGAATGAACATGTCGCTCGAAAACATTATAGGCGCACAACTTGGTAGGTCCAATGATTGTAGGCTGGGTTCTAACGTCATTGA
CGAAGCCATGGATCGTGTGAATGACCAGCTCAGGGCCATTGCAGAGTGGTCGAAGGTAACCAGGCATGAGGAAGATGTTGTGCGACAGGAAGTCATTAGACAGTTGCAGG
CTACCCTCAGCTCAAAGCTATCTATCATGAAAGCCTTCTTGGACCTACCCGATGATATGAAGCTCGCATACAACAACGTCATTTTACACGATAACCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCCCTACAATGTATAGCTACGGAATGAACATGTCGCTCGAAAACATTATAGGCGCACAACTTGGTAGGTCCAATGATTGTAGGCTGGGTTCTAACGTCATTGA
CGAAGCCATGGATCGTGTGAATGACCAGCTCAGGGCCATTGCAGAGTGGTCGAAGGTAACCAGGCATGAGGAAGATGTTGTGCGACAGGAAGTCATTAGACAGTTGCAGG
CTACCCTCAGCTCAAAGCTATCTATCATGAAAGCCTTCTTGGACCTACCCGATGATATGAAGCTCGCATACAACAACGTCATTTTACACGATAACCCGTGA
Protein sequenceShow/hide protein sequence
MEFPTMYSYGMNMSLENIIGAQLGRSNDCRLGSNVIDEAMDRVNDQLRAIAEWSKVTRHEEDVVRQEVIRQLQATLSSKLSIMKAFLDLPDDMKLAYNNVILHDNP