CuGenDBv2

Gene ID	IVF0018353
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Genome location	chr12:7554584..7554940
RNA-Seq Expression	IVF0018353
Synteny	IVF0018353
Gene Ontology terms	GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0000502 - proteasome complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

6.59e-53

88.03

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPP RQRPPN+RQPP N+QN+S  KPPQSVASSSGTTPSRK+ P+QS APSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP PSTALLR
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPTTPNKRAASP AS
Subjt:  PFGPTTPNKRAASPAAS

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

3.33e-53

88.89

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPPGRQRP N+RQP QNSQNS+PQ+PPQSVA+SSGTTPSRKKSPAQS APSPMSAENYAMDLQFEQVSRRRQGSA+RTLTIQSDSSSLPP P TALL 
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPT PNKRAASPAAS
Subjt:  PFGPTTPNKRAASPAAS

KAA0050447.1 polyprotein [Cucumis melo var. makuwa]

4.69e-46

82.91

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPPGRQR PN+RQ PQ++QN+SPQ+P Q+VASSS TTPSR K  AQS A SPMSAENYAMDLQFEQVSRRRQGSA+RTLTIQSDSSSLPP PSTALL 
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPTTPNKR ASPAAS
Subjt:  PFGPTTPNKRAASPAAS

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

3.33e-53

88.89

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPPGRQRP N+RQP QNSQNS+PQ+PPQSVA+SSGTTPSRKKSPAQS APSPMSAENYAMDLQFEQVSRRRQGSA+RTLTIQSDSSSLPP P TALL 
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPT PNKRAASPAAS
Subjt:  PFGPTTPNKRAASPAAS

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

3.62e-52

87.18

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPP RQRPPN+RQPP N+QN+S  KPPQSVASSSGTTPSRK+ P+QS APSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP PST LLR
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPTTPNKRAASP AS
Subjt:  PFGPTTPNKRAASPAAS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQU5 Retrotransposable element Tf2

4.4e-43

88.03

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPP RQRPPN+RQPP N+QN+S  KPPQSVASSSGTTPSRK+ P+QS APSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP PSTALLR
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPTTPNKRAASP AS
Subjt:  PFGPTTPNKRAASPAAS

A0A5A7TBK1 Retrotransposable element Tf2

2.6e-43

88.89

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPPGRQRP N+RQP QNSQNS+PQ+PPQSVA+SSGTTPSRKKSPAQS APSPMSAENYAMDLQFEQVSRRRQGSA+RTLTIQSDSSSLPP P TALL 
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPT PNKRAASPAAS
Subjt:  PFGPTTPNKRAASPAAS

A0A5A7U7T9 Polyprotein

6.1e-37

82.91

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPPGRQR PN+RQ PQ++QN+SPQ+ PQ+VASSS TTPSR K  AQS A SPMSAENYAMDLQFEQVSRRRQGSA+RTLTIQSDSSSLPP PSTALL 
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPTTPNKR ASPAAS
Subjt:  PFGPTTPNKRAASPAAS

A0A5D3D2Q6 Retrotransposable element Tf2

2.6e-43

88.89

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPPGRQRP N+RQP QNSQNS+PQ+PPQSVA+SSGTTPSRKKSPAQS APSPMSAENYAMDLQFEQVSRRRQGSA+RTLTIQSDSSSLPP P TALL 
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPT PNKRAASPAAS
Subjt:  PFGPTTPNKRAASPAAS

A0A5D3DX32 Retrotransposable element Tf2

1.7e-42

87.18

Show/hide

Query:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR
        MEPPP RQRPPN+RQPP N+QN+S  KPPQSVASSSGTTPSRK+ P+QS APSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP PST LLR
Subjt:  MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLR

Query:  PFGPTTPNKRAASPAAS
        P GPTTPNKRAASP AS
Subjt:  PFGPTTPNKRAASPAAS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAACCGCCTCCTGGCCGGCAACGGCCACCGAACAAACGACAACCGCCGCAAAACAGTCAAAATAGTAGTCCACAGAAACCACCTCAATCAGTAGCTTCCTCCTCAGG
AACTACTCCTTCCAGAAAGAAATCCCCAGCTCAATCCTTTGCACCGTCACCTATGAGTGCAGAAAACTACGCCATGGATTTGCAATTCGAACAAGTTTCTAGGCGACGAC
AAGGTTCTGCTAAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCTTTTCCTTCAACCGCATTGTTGCGTCCCTTTGGACCAACAACTCCAAATAAGCGT
GCCGCTTCCCCGGCCGCTTCTTTCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEPPPGRQRPPNKRQPPQNSQNSSPQKPPQSVASSSGTTPSRKKSPAQSFAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPFPSTALLRPFGPTTPNKR
AASPAASF

IVF0018353 (gene) of Melon (IVF77) v1 genome