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IVF0018389 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018389
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:18770406..18770576
RNA-Seq ExpressionIVF0018389
SyntenyIVF0018389
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038851.1 retrotransposon protein [Cucumis melo var. makuwa]3.10e-2896.15Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LA SMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
KAA0041029.1 retrotransposon protein [Cucumis melo var. makuwa]5.31e-2796.15Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQW D+LAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
KAA0043059.1 retrotransposon protein [Cucumis melo var. makuwa]3.76e-2998.08Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
KAA0051443.1 retrotransposon protein [Cucumis melo var. makuwa]1.40e-26100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
KAA0065284.1 retrotransposon protein [Cucumis melo var. makuwa]3.63e-28100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
TrEMBL top hitse value%identityAlignment
A0A5A7STY2 Retrotransposon protein2.2e-21100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
A0A5A7TTQ6 Retrotransposon protein2.2e-21100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
A0A5A7UMZ4 Retrotransposon protein2.2e-21100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
A0A5D3BM56 Retrotransposon protein2.2e-21100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
A0A5D3D7X8 Retrotransposon protein2.2e-21100Show/hide
Query:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
        MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
Subjt:  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACAACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCGTAACGCTTAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACAACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCGTAACGCTTAGCTAA
Protein sequenceShow/hide protein sequence
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFVTLS