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IVF0018444 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018444
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationchr08:13916687..13917019
RNA-Seq ExpressionIVF0018444
SyntenyIVF0018444
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK04964.1 B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa]8.10e-1663.33Show/hide
Query:  QDGVKVALALFIETIMVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQK
        +D VKVAL  FI+T+M+I KMFIKD+GK LS F+I+ L NG+EWK  LTK  N+ VWLQK
Subjt:  QDGVKVALALFIETIMVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQK

TYK12921.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Cucumis melo var. makuwa]1.60e-0965.22Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IP+MFIKDYGKFLS+FVIL+L +G+EWK  LT   N  VWLQ+G
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

XP_011657840.1 B3 domain-containing transcription factor VRN1 isoform X1 [Cucumis sativus]7.11e-0963.04Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IP+MFIK YGK LSS VILKL +G+EWK  LT + N  VWL+KG
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

XP_031742404.1 B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus]7.11e-0963.04Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IP+MFIK YGK LSS VILKL +G+EWK  LT + N  VWL+KG
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

XP_031742405.1 B3 domain-containing transcription factor VRN1 isoform X3 [Cucumis sativus]7.09e-0963.04Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IP+MFIK YGK LSS VILKL +G+EWK  LT + N  VWL+KG
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

TrEMBL top hitse value%identityAlignment
A0A0A0KL64 Uncharacterized protein4.3e-0763.04Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IP+MFIK YGK LSS VILKL +G+EWK  LT + N  VWL+KG
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

A0A5D3C119 B3 domain-containing transcription factor VRN1-like1.7e-1163.33Show/hide
Query:  QDGVKVALALFIETIMVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQK
        +D VKVAL  FI+T+M+I KMFIKD+GK LS F+I+ L NG+EWK  LTK  N+ VWLQK
Subjt:  QDGVKVALALFIETIMVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQK

A0A5D3CM75 B3 domain-containing transcription factor VRN1-like isoform X21.1e-0765.22Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IP+MFIKDYGKFLS+FVIL+L +G+EWK  LT   N  VWLQ+G
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

A0A6J1GFY4 B3 domain-containing transcription factor VRN1-like isoform X12.1e-0663.04Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IPK F+K YGK LSS VILKL +G +WK  LT A N  VWLQKG
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

A0A6J1GFZ2 B3 domain-containing transcription factor VRN1-like isoform X22.1e-0663.04Show/hide
Query:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG
        ++IPK F+K YGK LSS VILKL +G +WK  LT A N  VWLQKG
Subjt:  MVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATTGATTTTAGGATGACTATTTACTTTTATGGTTTGTGGACAACCGGTGTAACAATTGATAAAGATTGTAAAGGCCAGACAATAAGGTTCAGAAGAAGAAGAAA
AAAGGTGCAAGATGGTGTGAAGGTTGCCTTGGCCCTCTTTATCGAAACTATTATGGTTATTCCAAAGATGTTTATAAAAGACTATGGTAAGTTCTTATCAAGTTTTGTGA
TTCTGAAGCTTTCAAATGGAAAGGAATGGAAATTTGATTTGACAAAGGCATATAACGAAGTTGTTTGGCTGCAAAAAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTATTGATTTTAGGATGACTATTTACTTTTATGGTTTGTGGACAACCGGTGTAACAATTGATAAAGATTGTAAAGGCCAGACAATAAGGTTCAGAAGAAGAAGAAA
AAAGGTGCAAGATGGTGTGAAGGTTGCCTTGGCCCTCTTTATCGAAACTATTATGGTTATTCCAAAGATGTTTATAAAAGACTATGGTAAGTTCTTATCAAGTTTTGTGA
TTCTGAAGCTTTCAAATGGAAAGGAATGGAAATTTGATTTGACAAAGGCATATAACGAAGTTGTTTGGCTGCAAAAAGGATGA
Protein sequenceShow/hide protein sequence
MIIDFRMTIYFYGLWTTGVTIDKDCKGQTIRFRRRRKKVQDGVKVALALFIETIMVIPKMFIKDYGKFLSSFVILKLSNGKEWKFDLTKAYNEVVWLQKG