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IVF0018498 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018498
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:10028631..10029395
RNA-Seq ExpressionIVF0018498
SyntenyIVF0018498
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038979.1 uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa]2.22e-8770.67Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------
        MVGSASTNFSDVITIGERIEFGVKNGRI+D +SE RRMM+PKKKEEEIHELSSTQRVVHV SP VGQTNYS SYQNE                       
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------

Query:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS
                         VG+STENCFPL+AKVQSLVKA WLKFKKT EE DVNQNPLPN+EGP IN+VDTF ERYKN+VCDVTTSMN LFQIL  AGYLS
Subjt:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS

Query:  PRFNNDEG
        PRFNNDEG
Subjt:  PRFNNDEG

KAA0063019.1 uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa]4.56e-8270.5Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVG---------------------
        MVGSASTNFSDVIT+GE+IEFGVKNGRI+D +SE RRMMTPKKKEEEIHELSSTQRVVHV SP VGQTNYS SYQN V                      
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVG---------------------

Query:  --------NSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSL
                +STENCFPL+AKVQSLVKA WLKFKKT EE DVNQNP P +EGP IN+VDTF +RYKN+VCDVTTSMN LFQIL  AGYLSPRFNND+G  L
Subjt:  --------NSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSL

TYK16525.1 uncharacterized protein E5676_scaffold21G003390 [Cucumis melo var. makuwa]1.73e-9170.32Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYS----------------------PSY----
        MVGSASTNFS+VITIGERIEFGVKNGRITDSSSETRRMMT  KKEEEIHELSSTQRVVHV SP + QTNYS                      P Y    
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYS----------------------PSY----

Query:  ---------QNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNN
                    VG+S ENCFPL+AKVQSLVKA WLKFKK GE+ ++NQNPLPN+EGPTINVVDTF ERYKN++CDVTTSMN LFQIL G GYLS RFNN
Subjt:  ---------QNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNN

Query:  DEGRSLDVPTRSSVYSTLR
        D GRSLD PTRSSVYSTLR
Subjt:  DEGRSLDVPTRSSVYSTLR

TYK28914.1 Gag-pro-like protein [Cucumis melo var. makuwa]6.72e-129100Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKW
        MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKW
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKW

Query:  LKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR
        LKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR
Subjt:  LKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR

XP_016903339.1 PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]1.18e-7967.79Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------
        MVGSASTNFSDVITIGE IEFGVKNGRI D SSE RRMMTPKKKEEEIHELSST++VVHV SP VGQ NYS +YQN                        
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------

Query:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS
                         VG+STENCFPL+AKVQSLVKA WLKFKKT EE DVNQNPLPN+EGP IN+VD F +RYKN+VCDVTTSMN LFQIL  AGYLS
Subjt:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS

Query:  PRFNNDEG
        PRFNNDEG
Subjt:  PRFNNDEG

TrEMBL top hitse value%identityAlignment
A0A5A7T401 Retrotrans_gag domain-containing protein9.8e-6667.79Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------
        MVGSASTNFSDVITIGE IEFGVKNGRI D SSE RRMMTPKKKEEEIHELSST++VVHV SP VGQ NYS +YQN                        
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------

Query:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS
                         VG+STENCFPL+AKVQSLVKA WLKFKKT EE DVNQNPLPN+EGP IN+VD F +RYKN+VCDVTTSMN LFQIL  AGYLS
Subjt:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS

Query:  PRFNNDEG
        PRFNNDEG
Subjt:  PRFNNDEG

A0A5A7TCG9 Uncharacterized protein2.9e-7070.67Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------
        MVGSASTNFSDVITIGERIEFGVKNGRI+D +SE RRMM+PKKKEEEIHELSSTQRVVHV SP VGQTNYS SYQNE                       
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNE-----------------------

Query:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS
                         VG+STENCFPL+AKVQSLVKA WLKFKKT EE DVNQNPLPN+EGP IN+VDTF ERYKN+VCDVTTSMN LFQIL  AGYLS
Subjt:  -----------------VGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLS

Query:  PRFNNDEG
        PRFNNDEG
Subjt:  PRFNNDEG

A0A5A7VBN6 Retrotrans_gag domain-containing protein2.8e-6870.5Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVG---------------------
        MVGSASTNFSDVIT+GE+IEFGVKNGRI+D +SE RRMMTPKKKEEEIHELSSTQRVVHV SP VGQTNYS SYQN V                      
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVG---------------------

Query:  --------NSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSL
                +STENCFPL+AKVQSLVKA WLKFKKT EE DVNQNP P +EGP IN+VDTF +RYKN+VCDVTTSMN LFQIL  AGYLSPRFNND+G  L
Subjt:  --------NSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSL

A0A5D3CYF0 Retrotrans_gag domain-containing protein7.5e-7470.32Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYS----------------------PSY----
        MVGSASTNFS+VITIGERIEFGVKNGRITDSSSETRRMMT  KKEEEIHELSSTQRVVHV SP + QTNYS                      P Y    
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYS----------------------PSY----

Query:  ---------QNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNN
                    VG+S ENCFPL+AKVQSLVKA WLKFKK GE+ ++NQNPLPN+EGPTINVVDTF ERYKN++CDVTTSMN LFQIL G GYLS RFNN
Subjt:  ---------QNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNN

Query:  DEGRSLDVPTRSSVYSTLR
        D GRSLD PTRSSVYSTLR
Subjt:  DEGRSLDVPTRSSVYSTLR

A0A5D3DZH7 Gag-pro-like protein3.0e-99100Show/hide
Query:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKW
        MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKW
Subjt:  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKW

Query:  LKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR
        LKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR
Subjt:  LKFKKTGEEPDVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAGTGCTTCAACTAATTTCTCGGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAAAAATGGAAGGATCACTGATTCTTCTTCAGAGACAAGAAG
GATGATGACCCCAAAGAAAAAAGAGGAAGAAATACATGAGTTGAGCTCAACTCAAAGAGTAGTGCATGTATTCTCACCAAATGTGGGGCAGACAAATTACTCTCCTAGTT
ATCAGAATGAAGTTGGGAATTCTACGGAGAATTGTTTTCCTTTGGAAGCTAAAGTGCAAAGTCTAGTCAAGGCCAAATGGTTGAAATTCAAGAAAACAGGAGAAGAGCCT
GACGTTAACCAGAACCCTTTACCAAATAATGAGGGTCCCACCATAAATGTTGTTGACACATTCAAAGAAAGATACAAGAATGAGGTGTGTGATGTGACTACTTCAATGAA
TGCACTTTTCCAAATCCTTCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGAGAAGTTTGGATGTGCCAACGAGAAGCAGTGTTTATTCCACCCTGA
GATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAGTGCTTCAACTAATTTCTCGGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAAAAATGGAAGGATCACTGATTCTTCTTCAGAGACAAGAAG
GATGATGACCCCAAAGAAAAAAGAGGAAGAAATACATGAGTTGAGCTCAACTCAAAGAGTAGTGCATGTATTCTCACCAAATGTGGGGCAGACAAATTACTCTCCTAGTT
ATCAGAATGAAGTTGGGAATTCTACGGAGAATTGTTTTCCTTTGGAAGCTAAAGTGCAAAGTCTAGTCAAGGCCAAATGGTTGAAATTCAAGAAAACAGGAGAAGAGCCT
GACGTTAACCAGAACCCTTTACCAAATAATGAGGGTCCCACCATAAATGTTGTTGACACATTCAAAGAAAGATACAAGAATGAGGTGTGTGATGTGACTACTTCAATGAA
TGCACTTTTCCAAATCCTTCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGAGAAGTTTGGATGTGCCAACGAGAAGCAGTGTTTATTCCACCCTGA
GATAG
Protein sequenceShow/hide protein sequence
MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVVHVFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEP
DVNQNPLPNNEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRSSVYSTLR