CuGenDBv2

Gene ID	IVF0018514
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Helicase SEN1 isoform X4
Genome location	chr01:31828261..31829211
RNA-Seq Expression	IVF0018514
Synteny	IVF0018514
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004386 - helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059329.1 helicase SEN1 isoform X4 [Cucumis melo var. makuwa]

5.88e-120

100

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

TYK03997.1 uncharacterized protein E5676_scaffold347G001950 [Cucumis melo var. makuwa]

6.44e-132

94.95

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKV-CTMSLPLIKTFTRRAE
        MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKV C+    L     RRAE
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKV-CTMSLPLIKTFTRRAE

Query:  EAVDLGAKNGGKSDPFAF
        EAVDLGAKNGGKSDPFAF
Subjt:  EAVDLGAKNGGKSDPFAF

XP_008462193.1 PREDICTED: uncharacterized protein LOC103500612 isoform X3 [Cucumis melo]

3.42e-119

98.98

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPL+LPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTM LPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

XP_016902852.1 PREDICTED: uncharacterized protein LOC103500612 isoform X2 [Cucumis melo]

3.55e-119

98.98

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPL+LPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTM LPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

XP_016902853.1 PREDICTED: uncharacterized protein LOC103500612 isoform X4 [Cucumis melo]

2.19e-119

98.98

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPL+LPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTM LPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CGF3 uncharacterized protein LOC103500612 isoform X3

1.4e-103

98.98

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPL+LPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTM LPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

A0A1S4E3P9 uncharacterized protein LOC103500612 isoform X4

1.4e-103

98.98

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPL+LPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTM LPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

A0A1S4E3Q3 uncharacterized protein LOC103500612 isoform X2

1.4e-103

98.98

Show/hide

Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPL+LPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTM LPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

A0A5A7V0K3 Helicase SEN1 isoform X4

2.9e-104

100

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
        MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

A0A5D3BWW8 Uncharacterized protein

1.6e-107

94.95

Show/hide

Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKV-CTMSLPLIKTFTRRAE
        MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKV C+    L     RRAE
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKV-CTMSLPLIKTFTRRAE

Query:  EAVDLGAKNGGKSDPFAF
        EAVDLGAKNGGKSDPFAF
Subjt:  EAVDLGAKNGGKSDPFAF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.7e-19

35.71

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Query:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP
        GP+LVSS KDSSLH SLRQPA +L+Q+I+VSDA AL+ S+       L N +     + I  D+          DD                        
Subjt:  GPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVP

Query:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR
                                        +ESE   E  + + TW+SSS+ EI  +LGWKV TGSDDGG GKE KNS+ V  M L LI+T  R
Subjt:  MLWIDVLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTACAGATTTGGGCCCTGCTCTTGTGTCATCACTGAAGGATTCTTCTCTTCACAGCTCACTGAGGCAACCTGCATTTGAGCTTATACAATCTATTATAGTATCAGA
TGCTGCTGCATTGATTCATTCAATGCTGGATAGTTGTATAGTACCTCTCTCCAATGAAAGTAACGTGAATTATAGCTTCGTCATTGCTGAAGATGAAAACACACTTATTT
TTGCTCCCAATGAAATGGATGATAATTGTTGGGGTGAATTCAGTCTGCAGAGCAGTATAATTTCAACAGAATTTAAACAGTGGATGTGCGTACCTATGTTATGGATTGAT
GTTCTGGTTGATATTGATCCCTTGGTTCTGCCAATATCTTTTTCGAAAGCCATCTTCTGGGCTCGATCACGTTTTTCTATGGTAGAATCTGAAACCACTGCTGAATCTGA
ACTTCCACTGAGAACTTGGATATCGTCGTCTTCTTTTGAAATCTCCAGTTCACTGGGATGGAAGGTGCCAACTGGTTCTGATGATGGTGGGGATGGGAAAGAGCCAAAAA
ACTCACTAAAAGTGTGCACGATGTCCCTTCCTTTAATAAAAACATTTACAAGGAGAGCTGAGGAAGCAGTGGACTTGGGAGCCAAGAATGGGGGAAAGTCTGATCCTTTC
GCTTTTTGA

mRNA sequence

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Protein sequence

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MITDLGPALVSSLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPLSNESNVNYSFVIAEDENTLIFAPNEMDDNCWGEFSLQSSIISTEFKQWMCVPMLWID
VLVDIDPLVLPISFSKAIFWARSRFSMVESETTAESELPLRTWISSSSFEISSSLGWKVPTGSDDGGDGKEPKNSLKVCTMSLPLIKTFTRRAEEAVDLGAKNGGKSDPF
AF

IVF0018514 (gene) of Melon (IVF77) v1 genome