CuGenDBv2

Gene ID	IVF0018533
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr01:26869663..26871902
RNA-Seq Expression	IVF0018533
Synteny	IVF0018533
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]

1.37e-79

99.12

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]

5.57e-79

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVA+KELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]

9.28e-78

97.37

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]

1.37e-79

99.12

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]

1.11e-77

99.12

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRV1 Retrotransposon protein

6.0e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5A7V6Q9 Retrotransposon protein

2.1e-61

99.12

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5D3BCN9 Retrotransposon protein

6.0e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5D3CWL2 Retrotransposon protein

6.0e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5D3DCZ1 Retrotransposon protein

6.0e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGAAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGAACATTTTATAA

mRNA sequence

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Protein sequence

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MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN
WVRNIL

IVF0018533 (gene) of Melon (IVF77) v1 genome