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IVF0018613 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018613
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr05:5816999..5817229
RNA-Seq ExpressionIVF0018613
SyntenyIVF0018613
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042039.1 reverse transcriptase [Cucumis melo var. makuwa]6.80e-2770.67Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRNV+V P IDL+QKE+KDVEE+L  RVR GRRPTRRIHEYLVKW+    ++ETSWER ++LEAW QKIE+FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

KAA0050722.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa]1.16e-4298.68Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKLL
        MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKW+RAEDLEETSWERAKNLEAWTQKIEKFKLL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKLL

RRQ65156.1 hypothetical protein CQW39_37580 [Streptomyces griseofuscus]2.33e-2770.67Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRNV+ +P IDL+QKEDKDVEE+L  RVR GRRP RRIHEYLVKW+    +EETSWER ++LEAW QKIE FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

TYK04336.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa]2.76e-2769.33Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRN++ +P IDL+QKEDKDVEE+L  RVR GRRPTRRIHEYLVKW+    +EETSWER ++LEAW QKI+ FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

WP_148103103.1 hypothetical protein, partial [Streptomyces griseofuscus]2.54e-2770.67Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRNV+ +P IDL+QKEDKDVEE+L  RVR GRRP RRIHEYLVKW+    +EETSWER ++LEAW QKIE FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.5e-2070.67Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRNV+ +P+IDL+QKEDKDVEE+L  RVR GRRP RRIHEYLVKW+    +EETSWER ++LEAW QKIE FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

A0A5A7URR9 Reverse transcriptase1.5e-2070.67Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRN++ +P IDL+QKEDKDVEE+L  RVR GRRPTRRIHEYLVKW+    +EETSWER ++LEAW QKIE FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

A0A5A7V1R7 Reverse transcriptase6.8e-2174.03Show/hide
Query:  MQRN--VIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        MQRN  VIV+P+IDL+QKEDKDVEE+L  RVR GRRPTRRIHEYLVKW+    +EE+SWER ++LEAWTQKIE+FKL
Subjt:  MQRN--VIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

A0A5D3BSP5 Reverse transcriptase5.2e-2173.33Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL
        +QRN++ +P IDL+QKEDKDVEE+L  RVR+GRRPTRRIHEYLVKW R   LEETSWER ++LEAW QKIE FKL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKL

A0A5D3BTA6 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase7.7e-3398.68Show/hide
Query:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKLL
        MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKW+RAEDLEETSWERAKNLEAWTQKIEKFKLL
Subjt:  MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGTAATGTCATCGTTCAACCAAGCATTGATTTGAACCAGAAAGAAGATAAAGATGTTGAAGAAGTTCTTGTTGTTCGAGTGAGGAATGGTCGAAGACCCACAAG
AAGAATCCACGAGTACCTAGTAAAGTGGGAACGTGCTGAAGATCTAGAAGAAACTAGTTGGGAACGTGCCAAAAATCTAGAAGCCTGGACGCAAAAGATTGAAAAGTTCA
AGCTTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACGTAATGTCATCGTTCAACCAAGCATTGATTTGAACCAGAAAGAAGATAAAGATGTTGAAGAAGTTCTTGTTGTTCGAGTGAGGAATGGTCGAAGACCCACAAG
AAGAATCCACGAGTACCTAGTAAAGTGGGAACGTGCTGAAGATCTAGAAGAAACTAGTTGGGAACGTGCCAAAAATCTAGAAGCCTGGACGCAAAAGATTGAAAAGTTCA
AGCTTCTTTAG
Protein sequenceShow/hide protein sequence
MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWERAEDLEETSWERAKNLEAWTQKIEKFKLL