; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0018647 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018647
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:9486522..9486878
RNA-Seq ExpressionIVF0018647
SyntenyIVF0018647
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]6.28e-8196.61Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+AEKELFDNWVRV NII
Subjt:  IIAEKELFDNWVRVWNII
KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]1.87e-8296.61Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+A+KELFDNWVRVWNII
Subjt:  IIAEKELFDNWVRVWNII
KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]4.59e-8397.46Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+AEKELFDNWVRVWNII
Subjt:  IIAEKELFDNWVRVWNII
KAA0059075.1 retrotransposon protein [Cucumis melo var. makuwa]4.42e-8196.61Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+AEKELFDNWVRVWNII
Subjt:  IIAEKELFDNWVRVWNII
KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]5.70e-78100Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVR
        IIAEKELFDNWVR
Subjt:  IIAEKELFDNWVR
TrEMBL top hitse value%identityAlignment
A0A5A7T3X9 Retrotransposon protein7.2e-6296.61Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+AEKELFDNWVRV NII
Subjt:  IIAEKELFDNWVRVWNII
A0A5A7TXH6 Retrotransposon protein5.0e-6396.61Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+A+KELFDNWVRVWNII
Subjt:  IIAEKELFDNWVRVWNII
A0A5A7UHB1 Retrotransposon protein1.7e-6397.46Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+AEKELFDNWVRVWNII
Subjt:  IIAEKELFDNWVRVWNII
A0A5A7UZR1 Retrotransposon protein5.5e-6296.61Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE KC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVRVWNII
        I+AEKELFDNWVRVWNII
Subjt:  IIAEKELFDNWVRVWNII
A0A5A7VKT2 Retrotransposon protein2.1e-61100Show/hide
Query:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
        MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC
Subjt:  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKC

Query:  IIAEKELFDNWVR
        IIAEKELFDNWVR
Subjt:  IIAEKELFDNWVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACCTCAAATCGTGCCCCAAGACATGTTTGGACGAAAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTGGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCCGTCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGTGAAATGTATCATTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGTATGGAATATAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCTCAAATCGTGCCCCAAGACATGTTTGGACGAAAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTGGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCCGTCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGTGAAATGTATCATTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGTATGGAATATAATTTAA
Protein sequenceShow/hide protein sequence
MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDN
WVRVWNII