CuGenDBv2

Gene ID	IVF0018675
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr06:16077002..16077653
RNA-Seq Expression	IVF0018675
Synteny	IVF0018675
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

1.54e-97

95.86

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+LLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG
        EGLGHTKALHIQ+KCKDYVIARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVVKAFDGSRRE V+G
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG

KAA0037781.1 uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa]

8.36e-99

95.76

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        M IIAKDI+YKKLVTDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

KAA0065724.1 uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa]

1.15e-100

95.71

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSE KIIEQMHHT ARISLLSLFLNSEPHR+VLLDILNKAHVGHDISVEKFSGIIGNITSSNSIV TDDEIPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR
        EGLGHTKALHIQVKCKDYVIARVLVDN S LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

2.93e-99

98.22

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE V+G
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG

TYK27304.1 uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa]

8.36e-99

95.76

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        M IIAKDI+YKKLVTDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0R1 Uncharacterized protein

8.8e-83

96.97

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+LLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQ+KCKDYVIARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5A7T7R4 Ribonuclease H

3.0e-83

97.58

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNIT  NSIVFTDDEIPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVK FDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5A7TRL7 Ribonuclease H

2.3e-83

97.58

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YK LVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISV+KFSGIIGNITSSNSIVFTDD+IPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

4.4e-82

96.36

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDIS+EKFSGIIGNITSSN IVFTDD+IPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVK F+GSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5D3DEB3 Retrotrans_gag domain-containing protein

7.2e-85

99.39

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Query:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDI+YKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCTATCATTGCAAAAGATATAAAATACAAAAAGCTTGTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAAT
GCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTT
CAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCAT
ATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAGCTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTC
ACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTCGCGCAGAGAAGACGTTCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATT
GA

mRNA sequence

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Protein sequence

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MPIIAKDIKYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALH
IQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLGFTPQEWCHPHCIKN

IVF0018675 (gene) of Melon (IVF77) v1 genome