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IVF0018782 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018782
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibosomal RNA small subunit methyltransferase NEP1-like
Genome locationchr06:24798896..24799905
RNA-Seq ExpressionIVF0018782
SyntenyIVF0018782
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0070037 - rRNA (pseudouridine) methyltransferase activity (molecular function)
InterPro domainsIPR005304 - Ribosomal biogenesis, methyltransferase, EMG1/NEP1
IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 - Alpha/beta knot methyltransferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44185.1 hypothetical protein Csa_016257 [Cucumis sativus]2.21e-8488.44Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDE-FCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIG
        MDPYKYRPDIVH ALVHIMYSRI MAGLVQAVF+RTDEG+LIKVDPRTRIPESLDE FCDM       LSTKAKGN GKLLQVVKNPVIQYLPVNC+KIG
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDE-FCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIG

Query:  LSSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELISG
        LSSSSKKV+EPRDYLKTFSND+NLVFVIGAMAHGKID+ENIDELISG
Subjt:  LSSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELISG

TYK19496.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa]3.94e-97100Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

XP_008448880.1 PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo]6.53e-9798.62Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDP TRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        SSSSKKVIEPRDYLKTFSND+NLVFVIGAMAHGKIDDENIDELIS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

XP_022150056.1 ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia]3.66e-8180.69Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPY+YRPDI+HEALVHIM+SRICMAG+V+AVF++TD G+LI+VDPRTRIPESLDEFCDMMSQLLQK STKAKG RGKLLQ+VKNP+ QYLP+NCVKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        +SSS KV+EPRDY  TFSND+N VFVIGAM H KID E IDE+IS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

XP_031745076.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis sativus]5.22e-9092.47Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDE-FCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIG
        MDPYKYRPDIVH ALVHIMYSRI MAGLVQAVF+RTDEG+LIKVDPRTRIPESLDE FCDM+SQLLQKLSTKAKGN GKLLQVVKNPVIQYLPVNC+KIG
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDE-FCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIG

Query:  LSSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        LSSSSKKV+EPRDYLKTFSND+NLVFVIGAMAHGKID+ENIDELIS
Subjt:  LSSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

TrEMBL top hitse value%identityAlignment
A0A0A0K3C1 Uncharacterized protein3.3e-6488.44Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDE-FCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIG
        MDPYKYRPDIVH ALVHIMYSRI MAGLVQAVF+RTDEG+LIKVDPRTRIPESLDE FCDM       LSTKAKGN GKLLQVVKNPVIQYLPVNC+KIG
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDE-FCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIG

Query:  LSSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELISG
        LSSSSKKV+EPRDYLKTFSND+NLVFVIGAMAHGKID+ENIDELISG
Subjt:  LSSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELISG

A0A1S3BLD0 ribosomal RNA small subunit methyltransferase NEP1-like2.0e-7498.62Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDP TRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        SSSSKKVIEPRDYLKTFSND+NLVFVIGAMAHGKIDDENIDELIS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

A0A498KD62 Uncharacterized protein1.9e-4867.59Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPYKYRPDIVHEAL+ IM +R+CMAG +Q V+V+TD+GVLIKV+P  RIPESLD+FC MMSQLLQKL  KAKG R  LL+VV+NP+ Q+LP N VKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        S SS+K ++ R+Y+   SN+ NLVFV+GAMAHGKID E +D+ IS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

A0A5D3D7D3 Ribosomal RNA small subunit methyltransferase NEP1-like4.1e-75100Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

A0A6J1DAB0 ribosomal RNA small subunit methyltransferase NEP1-like6.2e-6380.69Show/hide
Query:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL
        MDPY+YRPDI+HEALVHIM+SRICMAG+V+AVF++TD G+LI+VDPRTRIPESLDEFCDMMSQLLQK STKAKG RGKLLQ+VKNP+ QYLP+NCVKIGL
Subjt:  MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
        +SSS KV+EPRDY  TFSND+N VFVIGAM H KID E IDE+IS
Subjt:  SSSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

SwissProt top hitse value%identityAlignment
O35130 Ribosomal RNA small subunit methyltransferase NEP11.1e-2745.83Show/hide
Query:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLS
        DP + RPDI H++L+ +M S +  AGL+Q V++ T + VLI+V+P+TRIP + D FC +M QLL KLS +A     KLL+V+KNPV  + PV C+KIG S
Subjt:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLS

Query:  SSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
         S + + + R+ +   S+D  +VFV+GA AHGK+  E  ++++S
Subjt:  SSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

Q06287 Ribosomal RNA small subunit methyltransferase NEP13.0e-2240.71Show/hide
Query:  RPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKK
        RPDI H+ L+ ++ S I  AG +Q V+++T  G+LI+V+P  RIP +   F  +M QLL KLS ++  +  KLL+V+KNP+  +LP  C K+ LS  +  
Subjt:  RPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKK

Query:  VIEPRDYLKTFSNDINLVFVIGAMAHGK--IDDENIDELI
        VI  +DY++   +D ++   +GAMA GK    DE +DE +
Subjt:  VIEPRDYLKTFSNDINLVFVIGAMAHGK--IDDENIDELI

Q10107 Ribosomal RNA small subunit methyltransferase mra13.9e-2243.97Show/hide
Query:  RPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKK
        RPDI H+ L+ ++ S +  AG +Q V++ T + VLI+V+P  RIP +   F  +M QLL KLS ++     KLL+V+KNPV  YLP NC K  LS  +  
Subjt:  RPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKK

Query:  VIEPRDYLKTFSNDINLVFVIGAMAHGKID--DENIDELIS
         + PR YL+T   + ++   IGAMAHG  D  D  +DE IS
Subjt:  VIEPRDYLKTFSNDINLVFVIGAMAHGKID--DENIDELIS

Q92979 Ribosomal RNA small subunit methyltransferase NEP11.8e-2745.83Show/hide
Query:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLS
        DP + RPDI H++L+ +M S +  AGL+Q V++ T + VLI+V+P+TRIP + D FC +M QLL KLS +A     KLL+V+KNPV  + PV C+K+G S
Subjt:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLS

Query:  SSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS
         S   V + R+ +   S+D  +VFV+GA AHGK+  E  ++++S
Subjt:  SSSKKVIEPRDYLKTFSNDINLVFVIGAMAHGKIDDENIDELIS

Q9W4J5 Ribosomal RNA small subunit methyltransferase NEP17.8e-2340.27Show/hide
Query:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLS
        DP   RPDI H+ L+ +  S +  AGL+Q VFVRT+  VLI+++P+TRIP +   F  +M QLL K   +A  +  +L+ V+KNP+  ++PV C K  +S
Subjt:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLS

Query:  SSSKKVIEPRDYL-----KTFSNDINLVFVIGAMAHGKIDDENIDELIS
         S K +   RD +      + S D  +V VIGA AHG +  +  +EL S
Subjt:  SSSKKVIEPRDYL-----KTFSNDINLVFVIGAMAHGKIDDENIDELIS

Arabidopsis top hitse value%identityAlignment
AT3G57000.1 nucleolar essential protein-related5.6e-3250Show/hide
Query:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQ-YLPVNCVKIGL
        +P  YRPDI H+AL+ I+ S +  AG ++AV+VRT++GVL +V P  RIP +   F  +M QLLQKLS  A  +R KLL+ VKNP+ + +LPVN  +IG 
Subjt:  DPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQ-YLPVNCVKIGL

Query:  SSSSKKVIEPRDYLKTF-SNDINLVFVIGAMAHGKIDDENIDELIS
        S SS+K++  + +L T   +D + VFV+GAMAHGKID   IDE +S
Subjt:  SSSSKKVIEPRDYLKTF-SNDINLVFVIGAMAHGKIDDENIDELIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCATACAAATATAGGCCTGATATAGTTCATGAGGCTCTTGTCCATATCATGTATTCTCGAATTTGTATGGCTGGATTAGTTCAGGCGGTATTCGTAAGAACTGA
TGAAGGGGTTCTCATCAAAGTTGACCCTCGTACTCGAATACCAGAATCATTGGATGAATTTTGTGATATGATGTCTCAATTGTTGCAAAAGCTTAGCACTAAAGCCAAAG
GCAACCGTGGAAAACTATTGCAAGTGGTCAAAAATCCTGTGATCCAGTACTTACCTGTCAATTGCGTGAAGATCGGTCTTTCCTCAAGTTCCAAAAAAGTGATTGAACCA
CGAGATTACCTCAAAACGTTTAGCAACGACATCAATCTAGTATTTGTGATTGGAGCAATGGCTCATGGCAAAATTGACGATGAAAACATAGATGAATTGATATCAGGTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGGATCCATACAAATATAGGCCTGATATAGTTCATGAGGCTCTTGTCCATATCATGTATTCTCGAATTTGTATGGCTGGATTAGTTCAGGCGGTATTCGTAAGAACTGA
TGAAGGGGTTCTCATCAAAGTTGACCCTCGTACTCGAATACCAGAATCATTGGATGAATTTTGTGATATGATGTCTCAATTGTTGCAAAAGCTTAGCACTAAAGCCAAAG
GCAACCGTGGAAAACTATTGCAAGTGGTCAAAAATCCTGTGATCCAGTACTTACCTGTCAATTGCGTGAAGATCGGTCTTTCCTCAAGTTCCAAAAAAGTGATTGAACCA
CGAGATTACCTCAAAACGTTTAGCAACGACATCAATCTAGTATTTGTGATTGGAGCAATGGCTCATGGCAAAATTGACGATGAAAACATAGATGAATTGATATCAGGTTA
G
Protein sequenceShow/hide protein sequence
MDPYKYRPDIVHEALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCDMMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKKVIEP
RDYLKTFSNDINLVFVIGAMAHGKIDDENIDELISG