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IVF0018800 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018800
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAP complex subunit sigma
Genome locationchr01:4765295..4766050
RNA-Seq ExpressionIVF0018800
SyntenyIVF0018800
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058373.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa]4.43e-4086.9Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQG
        MN+EGKPRFAKFYDFQPIEKQQELIRSVYGVLCS+AENISNFVEAESIFGS         ATLYFVLVFNSSENELAMLDLIQG
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQG

TYK30832.1 AP-3 complex subunit sigma-like [Cucumis melo var. makuwa]5.30e-4981.31Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLI
        MN+EGKP+FAKFYDFQPIEKQQELIR+VY VLCS+AENISNFVEA+SIFGS         ATLYF+LVFNSSEN+LAMLDLIQ  SNIL DGFVTSRLLI
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLI

Query:  MEMLQGI
        MEMLQGI
Subjt:  MEMLQGI

XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]4.85e-3985.88Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGF
        MN+EGKPRFAKFYDFQPIEKQQELIRSVYGVLCS+AENISNFVEAESIFGS         ATLYFVLVFNSSENELAMLDLIQ F
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGF

XP_008464326.1 PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo]5.02e-3976.29Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSR
        MN+EGKP+FAKFYDFQPIEKQQELIR+VY VLCS+AENISNFVEA+SIFGS         ATLYF+LVFNSSEN+LAMLDLIQ  SNIL DGF   R
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSR

XP_023003840.1 AP-3 complex subunit sigma-like [Cucurbita maxima]1.42e-3780.95Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQG
        MN++GKPRFAKFYDFQPIEKQ ELIRSVYGVLCS+AEN+SNFVEAESIFG          ATLYFV VFNSSENELAMLDLIQG
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQG

TrEMBL top hitse value%identityAlignment
A0A0A0KRY4 AP complex subunit sigma1.6e-3984.11Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLI
        MN+EGKPRFAKFYDFQPIEKQQELIRSVYGVLCS+AEN+SNFVE ESIFG          ATLYFVLVFNSSENELAMLDLIQG SNILCDGFVTS LLI
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLI

Query:  MEMLQGI
        ME+LQGI
Subjt:  MEMLQGI

A0A1S3BT37 AP complex subunit sigma1.5e-2983.15Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL
        MN+EGKPRFAKFYDFQPIEKQQELIRSVYGVLCS+AENISNFVEAESIFGS         ATLYFVLVFNSSENELAMLDLIQ F   L
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL

A0A1S3CL75 AP-3 complex subunit sigma-like1.5e-2978.49Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGF
        MN+EGKP+FAKFYDFQPIEKQQELIR+VY VLCS+AENISNFVEA+SIFGS         ATLYF+LVFNSSEN+LAMLDLIQ  SNIL DGF
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGF

A0A5A7UR76 AP-3 complex subunit sigma6.6e-3085.88Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGF
        MN+EGKPRFAKFYDFQPIEKQQELIRSVYGVLCS+AENISNFVEAESIFGS         ATLYFVLVFNSSENELAMLDLIQG+
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGF

A0A5D3E4J0 AP complex subunit sigma7.3e-3781.31Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLI
        MN+EGKP+FAKFYDFQPIEKQQELIR+VY VLCS+AENISNFVEA+SIFGS         ATLYF+LVFNSSEN+LAMLDLIQ  SNIL DGFVTSRLLI
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLI

Query:  MEMLQGI
        MEMLQGI
Subjt:  MEMLQGI

SwissProt top hitse value%identityAlignment
P59780 AP-3 complex subunit sigma-25.0e-1143.82Show/hide
Query:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL
        N+ GKPR  +FY   P E QQ+++R  + ++  + +NI NF+E  S+  GS Y       ATLYFV   +SSE+EL +LDLIQ F   L
Subjt:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL

Q1JQA3 AP-3 complex subunit sigma-25.0e-1143.82Show/hide
Query:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL
        N+ GKPR  +FY   P E QQ+++R  + ++  + +NI NF+E  S+  GS Y       ATLYFV   +SSE+EL +LDLIQ F   L
Subjt:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL

Q5RDP9 AP-3 complex subunit sigma-25.0e-1143.82Show/hide
Query:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL
        N+ GKPR  +FY   P E QQ+++R  + ++  + +NI NF+E  S+  GS Y       ATLYFV   +SSE+EL +LDLIQ F   L
Subjt:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL

Q8BSZ2 AP-3 complex subunit sigma-25.0e-1143.82Show/hide
Query:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL
        N+ GKPR  +FY   P E QQ+++R  + ++  + +NI NF+E  S+  GS Y       ATLYFV   +SSE+EL +LDLIQ F   L
Subjt:  NSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIF-GSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNIL

Q8VZ37 AP-3 complex subunit sigma4.0e-2467.47Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQ
        MN++GKPR AKFYD+ P+EKQQELIR V+ VLCS+ EN+SNF+E ES+FG          ATLYFVLVF+ SENELAMLDLIQ
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQ

Arabidopsis top hitse value%identityAlignment
AT3G50860.1 Clathrin adaptor complex small chain family protein2.8e-2567.47Show/hide
Query:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQ
        MN++GKPR AKFYD+ P+EKQQELIR V+ VLCS+ EN+SNF+E ES+FG          ATLYFVLVF+ SENELAMLDLIQ
Subjt:  MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCTGAGGGCAAGCCTCGTTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGTACTTTGCAGTCAAGCTGA
GAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGTTTTATGTGGCTCCTTGTATCGGAATTGCAACCCTTTATTTTGTGCTTGTCTTTAACAGTTCTGAGA
ATGAGCTTGCCATGCTTGACTTGATACAAGGTTTTTCCAATATTTTATGTGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCTGAGGGCAAGCCTCGTTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGTACTTTGCAGTCAAGCTGA
GAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGTTTTATGTGGCTCCTTGTATCGGAATTGCAACCCTTTATTTTGTGCTTGTCTTTAACAGTTCTGAGA
ATGAGCTTGCCATGCTTGACTTGATACAAGGTTTTTCCAATATTTTATGTGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA
Protein sequenceShow/hide protein sequence
MNSEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSQAENISNFVEAESIFGSFYVAPCIGIATLYFVLVFNSSENELAMLDLIQGFSNILCDGFVTSRLLIMEMLQGI