CuGenDBv2

Gene ID	IVF0018803
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Genome location	chr11:27129154..27129819
RNA-Seq Expression	IVF0018803
Synteny	IVF0018803
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015074 - DNA integration (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031317.1 uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa]

1.20e-62

100

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

KAA0039507.1 hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]

9.99e-60

95.5

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEK RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQIS
        DLAPSFDLQIS
Subjt:  DLAPSFDLQIS

KAA0065297.1 hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]

4.82e-63

98.23

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT++SPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

TYK15261.1 hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]

2.93e-64

100

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

TYK22453.1 uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]

1.20e-62

100

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDE0 Uncharacterized protein

6.9e-46

95.5

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEK RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTR+SPRI+
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQIS
        DLAPSFDLQIS
Subjt:  DLAPSFDLQIS

A0A5A7VDY1 Uncharacterized protein

1.9e-48

98.23

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT++SPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

A0A5A7VIA9 Uncharacterized protein

2.3e-49

100

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

A0A5D3CTS8 Uncharacterized protein

2.3e-49

100

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

A0A5D3DFX6 Uncharacterized protein

2.3e-49

100

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Query:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
        MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR
Subjt:  MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIR

Query:  DLAPSFDLQISQL
        DLAPSFDLQISQL
Subjt:  DLAPSFDLQISQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAA
CAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGG
AGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATC
TCTCAATTATAA

mRNA sequence

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Protein sequence

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MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQI
SQL

IVF0018803 (gene) of Melon (IVF77) v1 genome