; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0018808 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018808
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationchr03:24084627..24087436
RNA-Seq ExpressionIVF0018808
SyntenyIVF0018808
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150286.1 exosome complex exonuclease RRP46 homolog [Cucumis sativus]3.93e-17098.35Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVSVVPEGSTQGVGEPLEHG+ITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL M+SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

XP_008445020.1 PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo]4.99e-173100Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]3.88e-16192.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]1.11e-16092.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]9.14e-16091.77Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein2.3e-13198.35Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVSVVPEGSTQGVGEPLEHG+ITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL M+SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

A0A1S3BB90 exosome complex exonuclease RRP46 homolog1.4e-133100Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein1.4e-133100Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

A0A6J1GI69 exosome complex exonuclease RRP46 homolog1.6e-12492.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog3.6e-12492.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

SwissProt top hitse value%identityAlignment
Q84T68 Exosome complex exonuclease RRP46 homolog1.5e-7963.87Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        ME  R DGR PNQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT +PNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+ +DG+LLPCAINA CAALV AGIPLKHLAVAI C + E+G VILD  K EE+++K+  HLVFPN+  S   +   Q   E  E G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMD
         G MS +DY  C+ERG AA++++S F+R +LQ Q   D
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMD

Q9CRA8 Exosome complex component RRP461.4e-3235.43Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +   +P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCL
        +LL C +NA+C ALVDAG+P++ L   ++C L  +G ++LDPT  +E++ +A +                     +  E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCL

Query:  ERGRAATTKMSAFLRRSLQPQLS
           +AA+  +  F R SLQ + S
Subjt:  ERGRAATTKMSAFLRRSLQPQLS

Q9LX74 Exosome complex exonuclease RRP46 homolog8.8e-10474.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPNT +SV+PEGS+   GEP+EHG+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
         G MSVDDY  C+E GRAAT  +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

Q9NQT4 Exosome complex component RRP461.6e-3335.87Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ + T +P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCL
        +LL C +NA+C ALVDAG+P++ L   ++C L  +G ++LDPT  +E++ +A +                     + +E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCL

Query:  ERGRAATTKMSAFLRRSLQPQLS
           +AA+  +  F R SLQ + S
Subjt:  ERGRAATTKMSAFLRRSLQPQLS

Q9SP08 Exosome complex component RRP41 homolog1.0e-1430.64Show/hide
Query:  RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ECEMILKRTLQSICIL
        R DGR  N++R +     V+++A GSA +  G+TKV+AAVYGP+    K++  +     V+ +    Q    +R          E  +++++T+++  + 
Subjt:  RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ECEMILKRTLQSICIL

Query:  TTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASV
           P++   I +QV+  DG      INA+  AL DAGIP++ LAV+ S     N   +LD   +E+    A V
Subjt:  TTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASV

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein6.3e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPNT +SV+PEGS+   GEP+EHG+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
         G MSVDDY  C+E GRAAT  +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein6.3e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPNT +SV+PEGS+   GEP+EHG+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
         G MSVDDY  C+E GRAAT  +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein6.3e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPNT +SV+PEGS+   GEP+EHG+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
         G MSVDDY  C+E GRAAT  +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein6.3e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPNT +SV+PEGS+   GEP+EHG+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
         G MSVDDY  C+E GRAAT  +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein6.3e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPNT +SV+PEGS+   GEP+EHG+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVT

Query:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG
         G MSVDDY  C+E GRAAT  +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSSKAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAGACAGAGATGATGGTCGTACTCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTGA
TACGAAGGTTCTTGCTGCAGTCTATGGACCTAAAGCGGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGGCAAATTG
GAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCAT
GATGATGGAGCTCTTCTTCCTTGTGCTATTAATGCATCATGTGCTGCCCTTGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCCTGTTGTTTGTCTGA
GAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGAAAATGAAGGCATCTGTGCATTTGGTCTTCCCAAACACGCCTGTCTCAGTAGTTCCCGAAGGATCTA
CACAAGGTGTAGGTGAACCACTGGAGCATGGAATGATCACATCTGTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACT
ACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCTCAATGGATTCCTCAAAAGCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAGACAGAGATGATGGTCGTACTCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTGA
TACGAAGGTTCTTGCTGCAGTCTATGGACCTAAAGCGGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGGCAAATTG
GAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCAT
GATGATGGAGCTCTTCTTCCTTGTGCTATTAATGCATCATGTGCTGCCCTTGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCCTGTTGTTTGTCTGA
GAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGAAAATGAAGGCATCTGTGCATTTGGTCTTCCCAAACACGCCTGTCTCAGTAGTTCCCGAAGGATCTA
CACAAGGTGTAGGTGAACCACTGGAGCATGGAATGATCACATCTGTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACT
ACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCTCAATGGATTCCTCAAAAGCTGGTTGA
Protein sequenceShow/hide protein sequence
MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIH
DDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAAT
TKMSAFLRRSLQPQLSMDSSKAG