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IVF0018945 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018945
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:14950448..14951214
RNA-Seq ExpressionIVF0018945
SyntenyIVF0018945
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036843.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.83e-1640.52Show/hide
Query:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD
        MLQ R SSSQICCS+EDCHLKYV AEK+ I+N                  + K++ISNML       Q R S  S+  N  +         + +   + D
Subjt:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD

Query:  DGSVFPLSLQEEDNSVAL-PLPFKEDDNGVASPPLLQDEDGTIL---PLQNDD
        +G+  P  LQ+++N   L PL   +DD GVA PP LQDED +     PLQ DD
Subjt:  DGSVFPLSLQEEDNSVAL-PLPFKEDDNGVASPPLLQDEDGTIL---PLQNDD

KAA0054617.1 hypothetical protein E6C27_scaffold24G004190 [Cucumis melo var. makuwa]8.28e-2042.48Show/hide
Query:  SRTSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLH----REDHHLQYRPSRGSLISNMFFASASLKGAALP
        + ++SSQICCS+ED HLKYV  EK+ I N L    SSS ICC+R+  +LKYV   K+ ISN +     ++  HL+Y  +   +ISN+  +       + P
Subjt:  SRTSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLH----REDHHLQYRPSRGSLISNMFFASASLKGAALP

Query:  LPFHEKDDGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQ--DEDGTILP
        L     DDG   P  LQ  D  VA PLP +EDD  +ASP  +Q  D+D T+ P
Subjt:  LPFHEKDDGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQ--DEDGTILP

KAA0054621.1 hypothetical protein E6C27_scaffold24G004240 [Cucumis melo var. makuwa]2.63e-1944.76Show/hide
Query:  TSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEK
        ++SSQICCSREDCHL YV AEK+FI+NRL    S S ICCS++  +L+YV   KVVISNML         R +   LIS M         + +   F   
Subjt:  TSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEK

Query:  DDGSVFPLSLQ-------EEDNSVALPLPFKEDDNGVAS-PPL
        +D +  P +LQ       E+D+  ALPLP ++D+NG  S PPL
Subjt:  DDGSVFPLSLQ-------EEDNSVALPLPFKEDDNGVAS-PPL

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]1.00e-1354.55Show/hide
Query:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLH--REDHHLQYRPSRGSLISNM
        ML SR  SSQIC SR+ C LKYV  EK+ I+N L    SSS ICCSR+G  LKYV   KVV+SNML   +E  HL+Y  +    +SNM
Subjt:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLH--REDHHLQYRPSRGSLISNM

TYK02148.1 hypothetical protein E5676_scaffold388G00380 [Cucumis melo var. makuwa]6.35e-6870.3Show/hide
Query:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD
        MLQSRTSSSQICCSREDCHLKYVVAEKMFITN                                                 FASASLKGAALPLPFHEKD
Subjt:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD

Query:  DGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE
        DGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE
Subjt:  DGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE

TrEMBL top hitse value%identityAlignment
A0A5A7T1P5 Putative mitochondrial protein2.7e-1440.52Show/hide
Query:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD
        MLQ R SSSQICCS+EDCHLKYV AEK+ I+N                  + K++ISNM       LQ R S  S+  N  +         + +   + D
Subjt:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD

Query:  DGSVFPLSLQEEDNSVAL-PLPFKEDDNGVASPPLLQDEDGTIL---PLQNDD
        +G+  P  LQ+++N   L PL   +DD GVA PP LQDED +     PLQ DD
Subjt:  DGSVFPLSLQEEDNSVAL-PLPFKEDDNGVASPPLLQDEDGTIL---PLQNDD

A0A5A7UM54 Uncharacterized protein2.9e-1644.76Show/hide
Query:  TSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEK
        ++SSQICCSREDCHL YV AEK+FI+NRL    S S ICCS++  +L+YV   KVVISNM       L+ R +   LIS M         + +   F   
Subjt:  TSSSQICCSREDCHLKYVVAEKMFITNRL----SSSLICCSRKGCYLKYVV--KVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEK

Query:  DDGSVFPLSLQ-------EEDNSVALPLPFKEDDNGVAS-PPL
        +D +  P +LQ       E+D+  ALPLP ++D+NG  S PPL
Subjt:  DDGSVFPLSLQ-------EEDNSVALPLPFKEDDNGVAS-PPL

A0A5D3BNW3 Uncharacterized protein1.6e-1154.55Show/hide
Query:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITN----RLSSSLICCSRKGCYLKYVV--KVVISNMLH--REDHHLQYRPSRGSLISNM
        ML SR  SSQIC SR+ C LKYV  EK+ I+N    R SSS ICCSR+G  LKYV   KVV+SNML   +E  HL+Y  +    +SNM
Subjt:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITN----RLSSSLICCSRKGCYLKYVV--KVVISNMLH--REDHHLQYRPSRGSLISNM

A0A5D3BT38 Uncharacterized protein1.1e-5270.3Show/hide
Query:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD
        MLQSRTSSSQICCSREDCHLKYVVAEKMFITN                                                 FASASLKGAALPLPFHEKD
Subjt:  MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKD

Query:  DGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE
        DGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE
Subjt:  DGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE

A0A5D3DVX9 Uncharacterized protein9.8e-1742.48Show/hide
Query:  SRTSSSQICCSREDCHLKYVVAEKMFITN----RLSSSLICCSRKGCYLKYVV--KVVISNMLH----REDHHLQYRPSRGSLISNMFFASASLKGAALP
        + ++SSQICCS+ED HLKYV  EK+ I N    R SSS ICC+R+  +LKYV   K+ ISN +     ++  HL+Y  +   +ISN+  +       + P
Subjt:  SRTSSSQICCSREDCHLKYVVAEKMFITN----RLSSSLICCSRKGCYLKYVV--KVVISNMLH----REDHHLQYRPSRGSLISNMFFASASLKGAALP

Query:  LPFHEKDDGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQ--DEDGTILP
        L     DDG   P  LQ  D  VA PLP +EDD  +ASP  +Q  D+D T+ P
Subjt:  LPFHEKDDGSVFPLSLQEEDNSVALPLPFKEDDNGVASPPLLQ--DEDGTILP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAATCGAGAACATCATCATCTCAAATATGTTGCAGTCGAGAAGATTGTCATCTTAAATATGTTGTTGCTGAGAAGATGTTCATCACCAATAGGTTATCTTCATC
TTTAATATGTTGCAGCCGAAAAGGTTGTTATCTCAAATATGTTGTAAAAGTCGTCATCTCCAATATGTTACATCGAGAGGATCATCATCTCCAATATCGACCATCGAGGG
GATCATTAATCTCCAATATGTTCTTTGCCTCTGCCTCTCTAAAAGGTGCAGCTCTGCCTCTGCCTTTCCATGAAAAAGATGATGGTTCAGTTTTTCCTCTGTCTCTTCAA
GAAGAAGACAATAGTGTAGCTCTGCCTCTACCTTTCAAAGAAGACGACAATGGTGTAGCTTCACCTCCGCTTCTCCAAGATGAAGATGGCACAATTTTGCCTCTTCAGAA
TGATGACAAAGCAGAGCAAATATGCTCGATCGTTCCTACTAGAAGTTGGATCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAATCGAGAACATCATCATCTCAAATATGTTGCAGTCGAGAAGATTGTCATCTTAAATATGTTGTTGCTGAGAAGATGTTCATCACCAATAGGTTATCTTCATC
TTTAATATGTTGCAGCCGAAAAGGTTGTTATCTCAAATATGTTGTAAAAGTCGTCATCTCCAATATGTTACATCGAGAGGATCATCATCTCCAATATCGACCATCGAGGG
GATCATTAATCTCCAATATGTTCTTTGCCTCTGCCTCTCTAAAAGGTGCAGCTCTGCCTCTGCCTTTCCATGAAAAAGATGATGGTTCAGTTTTTCCTCTGTCTCTTCAA
GAAGAAGACAATAGTGTAGCTCTGCCTCTACCTTTCAAAGAAGACGACAATGGTGTAGCTTCACCTCCGCTTCTCCAAGATGAAGATGGCACAATTTTGCCTCTTCAGAA
TGATGACAAAGCAGAGCAAATATGCTCGATCGTTCCTACTAGAAGTTGGATCGAATAG
Protein sequenceShow/hide protein sequence
MLQSRTSSSQICCSREDCHLKYVVAEKMFITNRLSSSLICCSRKGCYLKYVVKVVISNMLHREDHHLQYRPSRGSLISNMFFASASLKGAALPLPFHEKDDGSVFPLSLQ
EEDNSVALPLPFKEDDNGVASPPLLQDEDGTILPLQNDDKAEQICSIVPTRSWIE