; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0018969 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018969
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:9519119..9519940
RNA-Seq ExpressionIVF0018969
SyntenyIVF0018969
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]1.44e-10963.5Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----
        MFINTLR PYYD+ VGSASTNFSD+I I ERIEF VKN RI DP S+T+R MTPKKK G    +    + +        G  N+ PSYQN GQSPF    
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----

Query:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP
                             ELLPQL+KSHQVAIV Q+P+QPPYPKWYDP AKCEYHA AVGHS++NCFPLKAK+QSLVKA WL+FKKT EE DVNQNP
Subjt:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP

Query:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAK-KRCLFHQETDDHSI
        LPNHEGP+IN V+TFM+R+KNKVSDV T M T FQIL+G+GYLSP  NNDD +K+GC   ++CLFH ET+DHSI
Subjt:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAK-KRCLFHQETDDHSI

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]9.22e-10764.39Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCIL----TNCGTDNYFPSYQNEGQSPF
        MFINTLR PYYD+ VGSASTNFSD+ITI ERIEF VKN RI DP S+ +R MTPKKK       E++  SS   ++       G  NY  SYQN G+SPF
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCIL----TNCGTDNYFPSYQNEGQSPF

Query:  -------------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDV
                                 ELLPQLLKSHQVAIV Q+P+QPPYPKWYDP  KCEYHA  VGHS++NCFPLKAK+QSLVKA WLKFKK  EESDV
Subjt:  -------------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDV

Query:  NQNPLPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI
        NQNPLPNHEGPAIN+V+TF ERYKNKV DVTT MNT FQIL  AGYLSP  NND+ EK GCA +K+CLFH E DDH I
Subjt:  NQNPLPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]5.53e-10864.23Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----
        MFINTLR PYYD+ VGSASTNFSD+ITI ERIEF VKN RI DP S+T+R MTPKKK G    +    + +        G  N+ PSYQN GQSPF    
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----

Query:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP
                             ELLPQL+KSHQVAIV Q+P+QPPYPKWYDP AKCEYHA AVGHS++NCFPLKAK+QSLVKA WL+FKKT EE DVNQNP
Subjt:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP

Query:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAK-KRCLFHQETDDHSI
        LPNHEGP+IN V+TF++R+KNKVSDV T M T FQIL+GAGYLSP  NNDD EK+GC   ++CLFH ET+DHSI
Subjt:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAK-KRCLFHQETDDHSI

KAA0065920.1 uncharacterized protein E6C27_scaffold538G001040 [Cucumis melo var. makuwa]5.21e-182100Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
        MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP

Query:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
        QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
Subjt:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD

Query:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
        VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
Subjt:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI

TYK15097.1 uncharacterized protein E5676_scaffold259G00220 [Cucumis melo var. makuwa]4.52e-181100Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
        MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP

Query:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
        QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
Subjt:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD

Query:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
        VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
Subjt:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase4.1e-9163.87Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----
        MFINTLR PYYD+ VGSASTNFSD+ITI ERIEF VKN RI DP S+T+R MTPKKK G    +    + +        G  N+ PSYQN GQSPF    
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----

Query:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP
                             ELLP L+KSHQVAIV Q+P+QPPYPKWYDP AKCEYHA AVGHS++NCFPLKAK+QSLVKA WL+FKKT EE DVNQNP
Subjt:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP

Query:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI
        LPNHEGP+IN V+TFM+R+KNKVSDV T M T FQIL+GAGYLSP  NNDD EK+GC   ++CL H ET+DHSI
Subjt:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI

A0A5A7V681 Retrotrans_gag domain-containing protein3.7e-9264.23Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----
        MFINTLR PYYD+ VGSASTNFSD+ITI ERIEF VKN RI DP S+T+R MTPKKK G    +    + +        G  N+ PSYQN GQSPF    
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----

Query:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP
                             ELLPQL+KSHQVAIV Q+P+QPPYPKWYDP AKCEYHA AVGHS++NCFPLKAK+QSLVKA WL+FKKT EE DVNQNP
Subjt:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP

Query:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI
        LPNHEGP+IN V+TF++R+KNKVSDV T M T FQIL+GAGYLSP  NNDD EK+GC   ++CLFH ET+DHSI
Subjt:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI

A0A5A7VAU5 Uncharacterized protein3.7e-9264.6Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----
        MFINTLR PYYD+ VGSASTNFSD+ITI ERIEF VKN RI DP S+T+R MTPKKK G    +    + +        G  N+ PSYQN GQSPF    
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPF----

Query:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP
                             ELLPQL+KSHQVAIV Q+P+QPPYPKWYDP AKCEYHA AVGHS++NCFPLKAK+QSLVKA WL+FKKT EE DVNQNP
Subjt:  ---------------------ELLPQLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNP

Query:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI
        LPNHEGP IN V+TFM+R+KNKVSDV T M T FQIL+GAGYLSP  NNDD EK+GC   ++CLFH ET+DHSI
Subjt:  LPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCA-KKRCLFHQETDDHSI

A0A5A7VFD9 Uncharacterized protein5.6e-141100Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
        MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP

Query:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
        QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
Subjt:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD

Query:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
        VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
Subjt:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI

A0A5D3CT42 Uncharacterized protein5.6e-141100Show/hide
Query:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
        MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP
Subjt:  MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLP

Query:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
        QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD
Subjt:  QLLKSHQVAIVSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSD

Query:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
        VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI
Subjt:  VTTLMNTFFQILYGAGYLSPTSNNDDVEKVGCAKKRCLFHQETDDHSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATAAACACTCTTCGAGTCCCATACTATGATAAAACAGTTGGAAGTGCTTCGACTAATTTCTCAGACATCATAACAATTGAAGAGAGGATTGAATTTGAAGTGAA
GAATGAAAGGATTGTTGATCCCACTTCAAAGACAAAAAGAACAATGACCCCAAAGAAAAAAGGAGGAAGAAGTACACGAGTTGAGCTCAACTCAAAGAGTAGCGACACAT
GTATCCTCACCAACTGTGGGACAGACAATTACTTTCCTAGTTATCAGAATGAAGGTCAAAGCCCATTCGAGCTTTTGCCTCAACTTTTAAAGAGTCATCAAGTGGCTATC
GTATCACAAAAGCCTATGCAACCACCCTATCCTAAGTGGTATGACCCTAAAGCAAAATGTGAATATCATGCTAGGGCAGTTGGACATTCTTCGAAGAACTGTTTTCCTTT
GAAAGCTAAAATGCAAAGTCTAGTTAAGGCCAATTGGTTGAAATTCAAGAAGACAAGAGAAGAGTCTGATGTCAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCA
TAAATGTTGTTAATACATTCATGGAAAGATACAAGAATAAGGTGAGTGATGTAACTACTTTAATGAATACGTTTTTCCAAATCCTTTATGGAGCTGGATATTTGTCACCA
ACGTCTAACAATGATGACGTGGAGAAGGTTGGATGTGCCAAGAAGCGATGTTTATTCCACCAGGAGACAGATGACCATTCCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATAAACACTCTTCGAGTCCCATACTATGATAAAACAGTTGGAAGTGCTTCGACTAATTTCTCAGACATCATAACAATTGAAGAGAGGATTGAATTTGAAGTGAA
GAATGAAAGGATTGTTGATCCCACTTCAAAGACAAAAAGAACAATGACCCCAAAGAAAAAAGGAGGAAGAAGTACACGAGTTGAGCTCAACTCAAAGAGTAGCGACACAT
GTATCCTCACCAACTGTGGGACAGACAATTACTTTCCTAGTTATCAGAATGAAGGTCAAAGCCCATTCGAGCTTTTGCCTCAACTTTTAAAGAGTCATCAAGTGGCTATC
GTATCACAAAAGCCTATGCAACCACCCTATCCTAAGTGGTATGACCCTAAAGCAAAATGTGAATATCATGCTAGGGCAGTTGGACATTCTTCGAAGAACTGTTTTCCTTT
GAAAGCTAAAATGCAAAGTCTAGTTAAGGCCAATTGGTTGAAATTCAAGAAGACAAGAGAAGAGTCTGATGTCAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCA
TAAATGTTGTTAATACATTCATGGAAAGATACAAGAATAAGGTGAGTGATGTAACTACTTTAATGAATACGTTTTTCCAAATCCTTTATGGAGCTGGATATTTGTCACCA
ACGTCTAACAATGATGACGTGGAGAAGGTTGGATGTGCCAAGAAGCGATGTTTATTCCACCAGGAGACAGATGACCATTCCATTTAG
Protein sequenceShow/hide protein sequence
MFINTLRVPYYDKTVGSASTNFSDIITIEERIEFEVKNERIVDPTSKTKRTMTPKKKGGRSTRVELNSKSSDTCILTNCGTDNYFPSYQNEGQSPFELLPQLLKSHQVAI
VSQKPMQPPYPKWYDPKAKCEYHARAVGHSSKNCFPLKAKMQSLVKANWLKFKKTREESDVNQNPLPNHEGPAINVVNTFMERYKNKVSDVTTLMNTFFQILYGAGYLSP
TSNNDDVEKVGCAKKRCLFHQETDDHSI