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IVF0018981 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018981
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription factor UPBEAT1
Genome locationchr04:14128268..14128676
RNA-Seq ExpressionIVF0018981
SyntenyIVF0018981
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]2.26e-52100Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KAE9618351.1 putative myc-type, basic helix-loop-helix (bHLH) domain-containing protein [Lupinus albus]4.53e-1550.56Show/hide
Query:  EILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        ++LAK +V  +R  K V+KK+V      SR   K I  +R+R L++++P SES+EL+GLF ETADYI+ LQ +VR+MQ +V+VL GSDE
Subjt:  EILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KAF3972052.1 hypothetical protein CMV_004404 [Castanea mollissima]1.93e-1352.94Show/hide
Query:  VEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        ++ V+RL         ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V+VL GSDE
Subjt:  VEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]2.18e-5095.56Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

XP_034911859.1 transcription factor UPBEAT1-like [Populus alba]2.35e-1366.67Show/hide
Query:  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R L+K+IP SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein4.7e-3795.56Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A4V5ZXB7 Uncharacterized protein4.1e-0966.67Show/hide
Query:  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R L+K+IP SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A5A7T9M0 Basic helix-loop-helix protein1.5e-38100Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A6A4QW51 Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein1.7e-1050.56Show/hide
Query:  EILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        ++LAK +V  +R  K V+KK+V      SR   K I  +R+R L++++P SES+EL+GLF ETADYI+ LQ +VR+MQ +V+VL GSDE
Subjt:  EILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

B9GSV5 Uncharacterized protein7.0e-0964.71Show/hide
Query:  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Subjt:  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT11.4e-0639.74Show/hide
Query:  RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL
        R+ A++ + KK+ +  R S  + +R C    +R++ L++++P +++ E L+GLFR+TADYI+ L+MKV++MQ +V VL
Subjt:  RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators1.0e-0739.74Show/hide
Query:  RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL
        R+ A++ + KK+ +  R S  + +R C    +R++ L++++P +++ E L+GLFR+TADYI+ L+MKV++MQ +V VL
Subjt:  RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL

AT4G30410.1 sequence-specific DNA binding transcription factors3.9e-0434.94Show/hide
Query:  LAKDTVSDRRI---AKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNG-LFRETADYIVWLQMKVRMMQALV
        L K TV  R+I   +K+++++K +  S  + +  KR+  +R + LR ++P  E M  +  L +ET DYIV LQ +V +M+++V
Subjt:  LAKDTVSDRRI---AKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNG-LFRETADYIVWLQMKVRMMQALV

AT4G30410.2 sequence-specific DNA binding transcription factors3.9e-0434.94Show/hide
Query:  LAKDTVSDRRI---AKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNG-LFRETADYIVWLQMKVRMMQALV
        L K TV  R+I   +K+++++K +  S  + +  KR+  +R + LR ++P  E M  +  L +ET DYIV LQ +V +M+++V
Subjt:  LAKDTVSDRRI---AKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNG-LFRETADYIVWLQMKVRMMQALV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGAT
TTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGA
AGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGA
mRNA sequenceShow/hide mRNA sequence
CACTATCTCAAAACCTTAAGCTTTTTGAAATCCATTTTTATAAAACCCCTCCAATTTTATGATGTTTTGAATCATCATGAAGATTTGAAGAGATATAGCTAAGTTTAAGC
AGTTTATTGAGAGGTATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTC
GTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTG
TGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGATTATACTGAAT
Protein sequenceShow/hide protein sequence
MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE