| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0053863.1 DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa] | 6.45e-152 | 100 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAH
GLEKGQVVKVTYDGDMTSAH
Subjt: GLEKGQVVKVTYDGDMTSAH
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| XP_004136650.1 DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] | 9.62e-154 | 96.48 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSP+ID SLQQFR+ FGQ+PDVDRLKL AAHHSDPSKRVLVVFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQVVKVTYDGDMT AH+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| XP_008443287.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo] | 2.20e-159 | 100 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQVVKVTYDGDMTSAHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 3.04e-141 | 88.11 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGF EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN DIDL+LQQFR+I+GQ+PDVDRLKL AAH +DPSKR+LV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQ+VKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 4.70e-145 | 91.19 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NS DIDLSLQQFR+I+GQ PDVDRLKL A H SDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEKQKLL+QYSIEEKQLPRMLR DA+ARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LCG9 Uncharacterized protein | 5.0e-120 | 96.48 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSP+ID SLQQFR+ FGQ+PDVDRLKL AAHHSDPSKRVLVVFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQVVKVTYDGDMT AH+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| A0A1S3B7M5 DNA-directed RNA polymerase V subunit 5A | 2.6e-124 | 100 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQVVKVTYDGDMTSAHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| A0A5D3DQJ3 DNA-directed RNA polymerase V subunit 5A | 3.2e-119 | 100 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAH
GLEKGQVVKVTYDGDMTSAH
Subjt: GLEKGQVVKVTYDGDMTSAH
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| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 1.4e-109 | 87.67 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGF EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN DIDL+LQQFR+I+GQ+ DVDRLKL AAH +DPSKR+LV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
GLEKGQ+VKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 8.0e-110 | 87.67 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
MEEDGF EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN DIDL+LQQFR+I+GQ+PDVDRLKL AAH +DPSKR+LV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCVW
LEKGQ+VKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCVW
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.3e-29 | 33.49 | Show/hide |
Query: DGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDR-----LKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH
D E++R + R+TV++M+ DRGY + ++D L+ F++ FG P + L + AH+ DP+ ++ V F + + I+ I Q+ + ++
Subjt: DGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDR-----LKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: SAHVTYRCV
++TYR V
Subjt: SAHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 3.6e-51 | 44.25 | Show/hide |
Query: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
EE E + + GT C+S D G ES R++L+R T EML+DRGY +N ++ L+L +FR +FG+ P+++RL++ SDP K++LVVF GT +
Subjt: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
V ++R + QI+N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP + D+ RYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 3.6e-75 | 62.86 | Show/hide |
Query: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDS
CLS Y+D + ESHRY+L+RR ++ML+DRGY ++ DI+LSL FR ++G+ PDVDRL++ A H SD +K+V +VF GT VKVNAIR++ I ++++
Subjt: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDS
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: SAHVTYRCVW
+HV +RCVW
Subjt: SAHVTYRCVW
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.1e-28 | 33.01 | Show/hide |
Query: DGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDR-----LKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH
D E++R + R+TV++M+ DRGY + ++D L+ F+ +G P + L + AH+ DP+ ++ V F + + I+ I Q+ + ++
Subjt: DGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDR-----LKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: SAHVTYRCV
++TYR V
Subjt: SAHVTYRCV
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 7.8e-70 | 60.29 | Show/hide |
Query: IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLI
I + E H+Y+L+RRT +EML+DRGY ++ DI+LSLQQFR ++G++PDVD L++ A H D SK++ VVFCGTG VKVNA+R IA + +++++ GLI
Subjt: IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLI
Query: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVT
L++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQV+KVTY +++ +HVT
Subjt: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVT
Query: YRCV
YRCV
Subjt: YRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 5.5e-71 | 60.29 | Show/hide |
Query: IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLI
I + E H+Y+L+RRT +EML+DRGY ++ DI+LSLQQFR ++G++PDVD L++ A H D SK++ VVFCGTG VKVNA+R IA + +++++ GLI
Subjt: IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLI
Query: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVT
L++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQV+KVTY +++ +HVT
Subjt: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVT
Query: YRCV
YRCV
Subjt: YRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 3.1e-29 | 36.5 | Show/hide |
Query: ESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
E R + ++T+++ML+DRGY I ++ ++ QQF G + L A +D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
Query: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 2.6e-52 | 44.25 | Show/hide |
Query: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
EE E + + GT C+S D G ES R++L+R T EML+DRGY +N ++ L+L +FR +FG+ P+++RL++ SDP K++LVVF GT +
Subjt: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
V ++R + QI+N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP + D+ RYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTSAHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTSAHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.6e-76 | 62.86 | Show/hide |
Query: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDS
CLS Y+D + ESHRY+L+RR ++ML+DRGY ++ DI+LSL FR ++G+ PDVDRL++ A H SD +K+V +VF GT VKVNAIR++ I ++++
Subjt: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDS
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: SAHVTYRCVW
+HV +RCVW
Subjt: SAHVTYRCVW
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 4.2e-26 | 34.78 | Show/hide |
Query: IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPD-VDRLKLYAAHHS--DPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH
+ D E R F RRTV++ML+DRGYTI D++L ++F F + + V++ L+ + + +P+ ++ V + V V I+ D +H
Subjt: IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPD-VDRLKLYAAHHS--DPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++V IT A AV + +E+F+ +L+ NIT+H L + VL ++ K+KLL Y++++ QLPR+L TD +ARYYGL++GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: SAHVTYR
+ TYR
Subjt: SAHVTYR
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