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IVF0019073 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019073
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:11136727..11136981
RNA-Seq ExpressionIVF0019073
SyntenyIVF0019073
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025506.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa]2.02e-2251.22Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY
        MAV   +IEKFDGKG F LWK K+K ++ Q+K  K ++DP KLP  +T  +KE +E  AYGA++LNLSD+++R+V  ++T Y
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY

PON64464.1 hypothetical protein TorRG33x02_273130 [Trema orientale]1.43e-2155.95Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI
        M  + IEIEKFDGKGDF +WK K+K +L QQK  KVL D S LP T+  S+KEE+   AY  LILNL+D+++R+V E+DT  K+
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI

PON96088.1 hypothetical protein TorRG33x02_080180, partial [Trema orientale]1.93e-2154.76Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI
        M  + IEIEKFDGKGDF +WK K+K +L QQK  K L D S LP T+  S+KEE+   AY  LILNL+D+++R+V E+DT  K+
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI

XP_038889301.1 uncharacterized protein LOC120079211 [Benincasa hispida]1.69e-2151.22Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY
        MA    EIEKFDGK +F LWK KIK +L QQKA   + +P+K P TLT ++K+ IE+NAYG ++LN+ DS++R++ ++ T Y
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]3.86e-2254.88Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY
        MA    EIEKFD K DF LWKVKIKV+L QQKA   + DP+K P TLT ++KE IE+NA G ++LN++D+++R+V  + T Y
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY

TrEMBL top hitse value%identityAlignment
A0A1S4DV47 uncharacterized protein LOC1079906921.8e-1454.43Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEED
        +AVA  +IEKFDGKGDF LWK KIK ++ QQKA K L DP KLP  +     E +E  AY A++LNLSDS++R++   D
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEED

A0A2P5CTT8 Uncharacterized protein5.5e-1655.95Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI
        M  + IEIEKFDGKGDF +WK K+K +L QQK  KVL D S LP T+  S+KEE+   AY  LILNL+D+++R+V E+DT  K+
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI

A0A2P5FE65 Uncharacterized protein (Fragment)2.1e-1554.76Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI
        M  + IEIEKFDGKGDF +WK K+K +L QQK  K L D S LP T+  S+KEE+   AY  LILNL+D+++R+V E+DT  K+
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-945.2e-1450Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY
        M     EIEKFDG GDF LW  +I  +L  QKA K L DP +LP TLT S++E +E  AY  LI+N++D+++R+V EE T +
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY

A0A5D3BQH4 Transcription initiation factor TFIID subunit 2-like1.6e-1551.22Show/hide
Query:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY
        MAV   +IEKFDGKG F LWK K+K ++ Q+K  K ++DP KLP  +T  +KE +E  AYGA++LNLSD+++R+V  ++T Y
Subjt:  MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-0736.49Show/hide
Query:  EIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDT
        E+ KF+G   F+ W+ +++ LL QQ  HKVL   SK P T+      +++  A  A+ L+LSD ++  + +EDT
Subjt:  EIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTGGCAATAATAGAAATTGAGAAGTTCGATGGAAAGGGAGATTTTGCTTTATGGAAGGTAAAAATAAAAGTTTTGCTAGATCAGCAAAAGGCTCACAAAGTCCT
TTTAGATCCTTCAAAACTTCCGACGACACTCACAACATCACAAAAGGAAGAAATTGAGTTAAATGCCTATGGTGCACTAATCCTAAACCTCAGTGACAGTATTATAAGAA
AAGTAACAGAAGAAGATACAACATACAAAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTGGCAATAATAGAAATTGAGAAGTTCGATGGAAAGGGAGATTTTGCTTTATGGAAGGTAAAAATAAAAGTTTTGCTAGATCAGCAAAAGGCTCACAAAGTCCT
TTTAGATCCTTCAAAACTTCCGACGACACTCACAACATCACAAAAGGAAGAAATTGAGTTAAATGCCTATGGTGCACTAATCCTAAACCTCAGTGACAGTATTATAAGAA
AAGTAACAGAAGAAGATACAACATACAAAATTTAG
Protein sequenceShow/hide protein sequence
MAVAIIEIEKFDGKGDFALWKVKIKVLLDQQKAHKVLLDPSKLPTTLTTSQKEEIELNAYGALILNLSDSIIRKVTEEDTTYKI