; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0019166 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019166
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:22800358..22800612
RNA-Seq ExpressionIVF0019166
SyntenyIVF0019166
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041767.1 gag/pol protein [Cucumis melo var. makuwa]2.00e-53100Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
KAA0047525.1 gag/pol protein [Cucumis melo var. makuwa]9.93e-4283.33Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        +GKG  +EANVATTEKELVGGSS  TRV TLNMKKKRKGKTPKNS+GKKVAK KCYHCNED HWLRNCPKY  +KKAEKEA+GN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
KAA0051354.1 gag/pol protein [Cucumis melo var. makuwa]3.79e-4285.71Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKG  +EAN ATTEKELVGGSS  TRV TLNMKKKRKG TPKNSEGKKVAKGKC HCNED HWLRNCPKY AEKKAEK AQGN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]5.69e-4385.71Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKG  +E NV TTEKELVGGSS  TRV TLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKY  EKKA+KEAQ N
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
TYK16526.1 gag/pol protein [Cucumis melo var. makuwa]1.22e-4285.71Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKG  +EANVATTEKELVGGSSF TR  TLNMKKKRK KTPKNSEGKKVAKGKCYHCNEDG+WLRNC KY A KK EKEAQGN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
TrEMBL top hitse value%identityAlignment
A0A5A7U1L7 Gag/pol protein1.0e-3083.33Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        +GKG  +EANVATTEKELVGGSS  TRV TLNMKKKRKGKTPKNS+GKKVAK KCYHCNED HWLRNCPKY  +KKAEKEA+GN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
A0A5A7U7R6 Gag/pol protein8.0e-3185.71Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKG  +EAN ATTEKELVGGSS  TRV TLNMKKKRKG TPKNSEGKKVAKGKC HCNED HWLRNCPKY AEKKAEK AQGN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
A0A5D3BYQ2 Gag/pol protein3.2e-3285.71Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKG  +E NV TTEKELVGGSS  TRV TLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKY  EKKA+KEAQ N
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
A0A5D3D1G4 Gag/pol protein6.1e-3185.71Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKG  +EANVATTEKELVGGSSF TR  TLNMKKKRK KTPKNSEGKKVAKGKCYHCNEDG+WLRNC KY A KK EKEAQGN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
A0A5D3DTN5 Gag/pol protein4.2e-40100Show/hide
Query:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
        MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
Subjt:  MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGGGGATAGGATTGGAAGCAAATGTCGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCATTTATGACTAGAGTTGAAACTTTAAATATGAAGAAGAAGAG
AAAGGGGAAGACTCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAATGAGGACGGGCATTGGTTGAGAAATTGCCCAAAGTACTTTGCTG
AGAAGAAAGCTGAAAAGGAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAGGGGATAGGATTGGAAGCAAATGTCGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCATTTATGACTAGAGTTGAAACTTTAAATATGAAGAAGAAGAG
AAAGGGGAAGACTCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAATGAGGACGGGCATTGGTTGAGAAATTGCCCAAAGTACTTTGCTG
AGAAGAAAGCTGAAAAGGAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MGKGIGLEANVATTEKELVGGSSFMTRVETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQGN