CuGenDBv2

Gene ID	IVF0019202
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosome biogenesis protein
Genome location	chr08:30756829..30761467
RNA-Seq Expression	IVF0019202
Synteny	IVF0019202
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

8.67e-88

96.08

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Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQP EEPKKKK+NKNGSKKRKEKK KA ARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

1.86e-228

95.75

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Query:  VLISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIV
        +LISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIV
Subjt:  VLISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIV

Query:  ALSCVAAGYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQG--------------PNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWA
        ALSCVAAGYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQG              PNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWA
Subjt:  ALSCVAAGYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQG--------------PNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWA

Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

6.12e-88

95.42

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Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

XP_016900348.1 PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo]

8.85e-77

100

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Query:  VGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIE
        VGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIE
Subjt:  VGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIE

Query:  EPKKKKINKNGSKKRKEKKSKALARPSSMEM
        EPKKKKINKNGSKKRKEKKSKALARPSSMEM
Subjt:  EPKKKKINKNGSKKRKEKKSKALARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

4.80e-82

91.5

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Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SD KSKAERKFEKKVQFYERVGE+I+TLNAQK+ITKKK+HRRRKRDLKAFDLSTLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRA+QLHLEGTQPIEEPKKK  NKNGSKKRKEKKSKA  RPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

3.2e-70

95.42

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Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

A0A1S4DWK8 putative ribosome biogenesis protein slx9-like

2.1e-61

100

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Query:  VGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIE
        VGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIE
Subjt:  VGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIE

Query:  EPKKKKINKNGSKKRKEKKSKALARPSSMEM
        EPKKKKINKNGSKKRKEKKSKALARPSSMEM
Subjt:  EPKKKKINKNGSKKRKEKKSKALARPSSMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like

5.0e-180

95.75

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Query:  VLISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIV
        +LISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIV
Subjt:  VLISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIV

Query:  ALSCVAAGYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQ--------------GPNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWA
        ALSCVAAGYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQ              GPNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWA
Subjt:  ALSCVAAGYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQ--------------GPNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWA

Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

4.2e-70

96.08

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Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQP EEPKKKK+NKNGSKKRKEKK KA ARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

2.0e-56

80.39

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Query:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SD KSKAERKFEKK+QFYERVGE+IATLNAQK+ITKKK  RRRKRDLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMGTVLNH
Subjt:  NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM
        P FQADPL A+ LHL+ TQP+EE KKKK N+NGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

1.2e-29

51.05

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Query:  SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHP
        S+V +K+++KFEKK+QFY +V +++ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP
Subjt:  SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHP

Query:  VFQADPLRAVQLHLEGTQ-PIEEPKKKKINKNGSKKRKEKKSK
         FQADP+ ++  HL   Q P+EE  KKK N NGSKKR +KK K
Subjt:  VFQADPLRAVQLHLEGTQ-PIEEPKKKKINKNGSKKRKEKKSK

AT2G01640.2 unknown protein

1.2e-29

51.05

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Query:  SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHP
        S+V +K+++KFEKK+QFY +V +++ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP
Subjt:  SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHP

Query:  VFQADPLRAVQLHLEGTQ-PIEEPKKKKINKNGSKKRKEKKSK
         FQADP+ ++  HL   Q P+EE  KKK N NGSKKR +KK K
Subjt:  VFQADPLRAVQLHLEGTQ-PIEEPKKKKINKNGSKKRKEKKSK

Sequences

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CDS sequence

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ATGGCGTCAGTTCTAATTTCACGCTGCCTCGATCGTCTCTGTGACCCTCTCATCTCGGCCTCTTATCTCACGCCGTCGCCGGCGTTCAATCGTCTTTTCTTCTCAGTCTC
CAGCCGGTCTCTTCTTCTCAGAAGTCTCCGATCGTCGCTCGGGAGACTCGGCCTTTCATCTCACGCCGTCGCCGGCGTTCAATCCCTCTCCTTTCCAGTCTTCGGCCGTC
TTTCCTTCTCAGAAGTCTCTCAACCTCCGATCGTCTCTCCTTCTCAGAAGTCTCCGATCGTCGCTCGCACTTGGCTCTCCATCATAGTTGCGTTGAGTTGTGTTGCCGCC
GGCTACGATGTGTACAACTTTCCTCGAGGACAAAGGAAGTTGATACCTAACAGTATTTTGATTGTGCTTGTAAATCGTAATGGTTGCTTTGCTATATATCCCACACCTTG
TCCTCAAGGTCCTAATATCATCCTACTTTGTGATCTAAGCGCAGAAGTTTTTGATTTGAGTGTCGGTGAGGAAATTCCATCTTTTGATTCAAGTAATCAGAAAACTCATA
AGTTGTTATTATGGGCAAACCAGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAAGTATTGCTACCTTGAAT
GCTCAAAAGAGTATAACTAAGAAGAAAAACCATCGTAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAA
ACAAAAACCTTCTGCAGCGGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGG
CAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAAAAGATAAATAAAAATGGAAGCAAGAAAAGGAAAGAAAAGAAG
TCGAAAGCCTTGGCAAGACCGTCATCTATGGAGATGTGA

mRNA sequence

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Protein sequence

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MASVLISRCLDRLCDPLISASYLTPSPAFNRLFFSVSSRSLLLRSLRSSLGRLGLSSHAVAGVQSLSFPVFGRLSFSEVSQPPIVSPSQKSPIVARTWLSIIVALSCVAA
GYDVYNFPRGQRKLIPNSILIVLVNRNGCFAIYPTPCPQGPNIILLCDLSAEVFDLSVGEEIPSFDSSNQKTHKLLLWANQSDVKSKAERKFEKKVQFYERVGESIATLN
AQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKK
SKALARPSSMEM

IVF0019202 (gene) of Melon (IVF77) v1 genome