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IVF0019280 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019280
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr05:5140046..5140788
RNA-Seq ExpressionIVF0019280
SyntenyIVF0019280
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025967.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]8.92e-9477.4Show/hide
Query:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTF
        MDVTQ+YIHWYNN+ RLYITR G AVGHLRSNNA+LRDV DD QQVLDICNNNERY++EI+NMYDLPIVPPPVHRGR         +  +   MTMMPT 
Subjt:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTF

Query:  GAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIV
        GAGYCDS+  TGYYD GV PSSSYMDVGPSTSYMH HGR YGEHNKYLYHEA A VSDRQEY+QEPENQEDRE H V
Subjt:  GAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIV

KAA0025972.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.13e-8871.07Show/hide
Query:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-------
        +DVTQ+YIH YN ITRLYIT+ GA     RSNNA+LRDVADD QQVLDICNNN+R++EEIHNMY LPIVPP +HRGRV+VEEAELDEVYHNV        
Subjt:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-------

Query:  ----------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSR
                  M MMPTFG GYCD +  T YYD+GV PSSSYMDVGPSTSYMHGH  DYGEHN+YLYHEA  +VSDRQEYQQEPENQE+ E H VQSR
Subjt:  ----------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSR

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]9.60e-11078.47Show/hide
Query:  DVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL--------
        DVTQ+YIHWY+NITRLYITRPGAAVG  RSNNA+LRDVADD QQ LDICNNNERY+EEIHNMYDLPIVPPPVHRG VRVEEAELD+VYHNV         
Subjt:  DVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL--------

Query:  ---------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRP
                 MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTSYMHGH R YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR+P
Subjt:  ---------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRP

Query:  ARNRRRSGC
         RNRRR GC
Subjt:  ARNRRRSGC

TYK01176.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]1.58e-8976.8Show/hide
Query:  RSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-----------------MTMMPTFGAGYCDSKFGTG
        RSNNA+LRDVADD QQ LDICNNNERY+EEIHNMYDLPIVPPPVHRG VRVEEAELD+VYHNV                  MTMMPTF AGYCD + G G
Subjt:  RSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-----------------MTMMPTFGAGYCDSKFGTG

Query:  YYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSGC
        YYDAGV PSSSY+DV PSTSYMHGH R YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR+P RNRR  GC
Subjt:  YYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSGC

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]9.73e-10777.62Show/hide
Query:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-------
        MDVTQ+YIH YNNITRLYITRPGA VGHLRSNNA+LRDV +DPQQVLDICNNNERY+E+IHN+YDLPIVPPPVHR R RVEEAELDEVYHNV        
Subjt:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-------

Query:  ----------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRR
                  MTMMPTFGAGYCDS+   GYYDA V P SSYMDVGPSTSYM+GHGR YGEHN+YLYHEA  DVSDRQEYQQEP+NQEDRE H VQSRRR+
Subjt:  ----------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRR

Query:  PARNRRRSGC
        PARNR+ SGC
Subjt:  PARNRRRSGC

TrEMBL top hitse value%identityAlignment
A0A5A7SMM2 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.7e-7277.4Show/hide
Query:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTF
        MDVTQ+YIHWYNN+ RLYITR G AVGHLRSNNA+LRDV DD QQVLDICNNNERY++EI+NMYDLPIVPPPVHRGR         +  +   MTMMPT 
Subjt:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTF

Query:  GAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIV
        GAGYCDS+  TGYYD GV PSSSYMDVGPSTSYMH HGR YGEHNKYLYHEA A VSDRQEY+QEPENQEDRE H V
Subjt:  GAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIV

A0A5A7UIF6 Serine/threonine-protein phosphatase 7 long form-like protein4.7e-6975.14Show/hide
Query:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTF
        MDVTQ+YIH YNNITRLYITRPG AVGHLRSNN +LRDV D PQQVLDICNNNE+Y+EEIHNMYDLPI                  +  +   MT+MPTF
Subjt:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTF

Query:  GAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRR
        GAGYCDSK  TGYYDAGV PSS YMDVGPS SYMHGHGR YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRR
Subjt:  GAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRR

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.0e-8478.47Show/hide
Query:  DVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV---------
        DVTQ+YIHWY+NITRLYITRPGAAVG  RSNNA+LRDVADD QQ LDICNNNERY+EEIHNMYDLPIVPPPVHRG VRVEEAELD+VYHNV         
Subjt:  DVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV---------

Query:  --------LMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRP
                 MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTSYMHGH R YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR+P
Subjt:  --------LMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRP

Query:  ARNRRRSGC
         RNRRR GC
Subjt:  ARNRRRSGC

A0A5D3BSG8 GATA zinc finger domain-containing protein 10-like isoform X23.6e-6976.8Show/hide
Query:  RSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV-----------------LMTMMPTFGAGYCDSKFGTG
        RSNNA+LRDVADD QQ LDICNNNERY+EEIHNMYDLPIVPPPVHRG VRVEEAELD+VYHNV                  MTMMPTF AGYCD + G G
Subjt:  RSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV-----------------LMTMMPTFGAGYCDSKFGTG

Query:  YYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSGC
        YYDAGV PSSSY+DV PSTSYMHGH R YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR+P RNRR  GC
Subjt:  YYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSGC

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein2.1e-8577.62Show/hide
Query:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV--------
        MDVTQ+YIH YNNITRLYITRPGA VGHLRSNNA+LRDV +DPQQVLDICNNNERY+E+IHN+YDLPIVPPPVHR R RVEEAELDEVYHNV        
Subjt:  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV--------

Query:  ---------LMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRR
                  MTMMPTFGAGYCDS+   GYYDA V P SSYMDVGPSTSYM+GHGR YGEHN+YLYHEA  DVSDRQEYQQEP+NQEDRE H VQSRRR+
Subjt:  ---------LMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRR

Query:  PARNRRRSGC
        PARNR+ SGC
Subjt:  PARNRRRSGC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAAACTTCG
TGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTC
ATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGT
ACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATA
TCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGACGAC
CAGCTCGAAATCGGCGACGTTCGGGTTGTGAACACATTGATTTTCTTTTATCAATCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAAACTTCG
TGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTC
ATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGT
ACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATA
TCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGACGAC
CAGCTCGAAATCGGCGACGTTCGGGTTGTGAACACATTGATTTTCTTTTATCAATCAAATAA
Protein sequenceShow/hide protein sequence
MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTFGAGYCDSKFG
TGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSGCEHIDFLLSIK