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IVF0019424 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019424
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr06:7292334..7292771
RNA-Seq ExpressionIVF0019424
SyntenyIVF0019424
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016070 - RNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036753.1 hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa]2.72e-2255.93Show/hide
Query:  DVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIM
        D PFQVLEKIN N +KV LRG                   NFDSRTN F+E E   MLN++EENET              H+GNSWEN QSQTNQEAIIM
Subjt:  DVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIM

Query:  AQGSTAKARAKRLQDGLS
         QGS  KARAKRLQDGL+
Subjt:  AQGSTAKARAKRLQDGLS

KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]1.30e-3055.4Show/hide
Query:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII
        RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLNN       +A+TNSN+EENE H+ NSW N Q QTNQE II
Subjt:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII

Query:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL
        M QGS  KARAKR +D L+ACLQA+F    K L  +  L
Subjt:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL

TYK14528.1 integrase [Cucumis melo var. makuwa]1.43e-1973.33Show/hide
Query:  NFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQD
        NFDS TNPF+E EN KMLNN       +AHTNSNE+ENEAH GNSWENFQ QTNQEAI MAQ S  KARAK LQD
Subjt:  NFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQD

TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]8.87e-3155.4Show/hide
Query:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII
        RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLNN       +A+TNSN+EENE H+ NSW N Q QTNQE II
Subjt:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII

Query:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL
        M QGS  KARAKR +D L+ACLQA+F    K L  +  L
Subjt:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL

TYK19543.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.30e-2761.54Show/hide
Query:  QVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGS
        QV EKIN N +KV LRG                   NFD RTNPFEE EN  MLN+       +AHTNSNEEENE H+GNSWEN QSQTNQEAIIM QGS
Subjt:  QVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGS

Query:  TAKARAKRLQDGLSACL
          KARAKRLQD L+ACL
Subjt:  TAKARAKRLQDGLSACL

TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase3.0e-2555.4Show/hide
Query:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII
        RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLNN       +A+TNSN+EENE H+ NSW N Q QTNQE II
Subjt:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII

Query:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL
        M QGS  KARAKR +D L+ACLQA+F    K L  +  L
Subjt:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL

A0A5D3B744 Integrase catalytic domain-containing protein9.2e-1955.93Show/hide
Query:  DVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIM
        D PFQVLEKIN N +KV LRG                   NFDSRTN F+E E   MLN++EENET              H+GNSWEN QSQTNQEAIIM
Subjt:  DVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIM

Query:  AQGSTAKARAKRLQDGLS
         QGS  KARAKRLQDGL+
Subjt:  AQGSTAKARAKRLQDGLS

A0A5D3CTJ1 Integrase2.4e-1473.33Show/hide
Query:  NFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQD
        NFDS TNPF+E EN KMLNN       +AHTNSNE+ENEAH GNSWENFQ QTNQEA IMAQ S  KARAK LQD
Subjt:  NFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQD

A0A5D3CW05 Zinc finger, CCHC-type3.0e-2555.4Show/hide
Query:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII
        RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLNN       +A+TNSN+EENE H+ NSW N Q QTNQE II
Subjt:  RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAII

Query:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL
        M QGS  KARAKR +D L+ACLQA+F    K L  +  L
Subjt:  MAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHL

A0A5D3D7R5 Transposon Ty3-G Gag-Pol polyprotein1.4e-2261.54Show/hide
Query:  QVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGS
        QV EKIN N +KV LRG                   NFD RTNPFEE EN  MLN+       +AHTNSNEEENE H+GNSWEN QSQTNQEAIIM QGS
Subjt:  QVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGS

Query:  TAKARAKRLQDGLSACL
          KARAKRLQD L+ACL
Subjt:  TAKARAKRLQDGLSACL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGAGGTAAGTATCATGTGCATGCTAAATTTAATATTGTTGACTTATC
CTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCA
ACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGCAATCATTATGGCTCAAGGCTCAACGGCAAAAGCT
AGAGCTAAAAGACTTCAGGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTTGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGAGGTAAGTATCATGTGCATGCTAAATTTAATATTGTTGACTTATC
CTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCA
ACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGCAATCATTATGGCTCAAGGCTCAACGGCAAAAGCT
AGAGCTAAAAGACTTCAGGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTTGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA
Protein sequenceShow/hide protein sequence
MRDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKA
RAKRLQDGLSACLQAKFLSLIKSLNFKRHLDTQGS