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IVF0019532 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019532
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:27902913..27903065
RNA-Seq ExpressionIVF0019532
SyntenyIVF0019532
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038851.1 retrotransposon protein [Cucumis melo var. makuwa]9.46e-2692Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDL  SMFT+W
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
KAA0057589.1 retrotransposon protein [Cucumis melo var. makuwa]2.51e-25100Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]2.37e-2694Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDD+DDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDL +SMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
TYK04228.1 retrotransposon protein [Cucumis melo var. makuwa]6.65e-2692Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCD+VDD+DEGDSTYATTTASEDIQYIETTNEWSQWRDDL +SMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]1.94e-2592Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYC+DVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDL +SMFT+W
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
TrEMBL top hitse value%identityAlignment
A0A5A7SZ61 Retrotransposon protein4.2e-1996Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLV+SMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
A0A5A7UG16 Retrotransposon protein1.2e-1894Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDL +SMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
A0A5A7USE5 Retrotransposon protein5.4e-1996Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQW DDLV+SMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
A0A5A7UVL4 Retrotransposon protein4.9e-20100Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
A0A5A7V4Q8 Retrotransposon protein5.4e-1994Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
        MTYCDD+DDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDL +SMFTEW
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACTGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGTCAAATCGATGTTCACCGAATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACTGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGTCAAATCGATGTTCACCGAATGGTAG
Protein sequenceShow/hide protein sequence
MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLVKSMFTEW