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IVF0019543 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019543
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr07:6312927..6314481
RNA-Seq ExpressionIVF0019543
SyntenyIVF0019543
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038307.1 Retrotransposable element Tf2 protein type 3 [Cucumis melo var. makuwa]5.66e-0895.65Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEW KWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

KAA0057386.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.26e-08100Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

KAA0063462.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.43e-08100Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

KGN54534.1 hypothetical protein Csa_012101 [Cucumis sativus]3.03e-5573.13Show/hide
Query:  KPKEWIKWIAWAEYCGILIMWSAASFSVSSITNGAHFLTVLFTLPDGFSFWLIGI---------------STLSDGHRKIPTIIDLLEKCRHSILLLNKG
        + +  IKWI      GILIMWSAASF VSSIT GAH LTVLFTL DGFSFWLIG+               ST SDGHRK PTIIDL EKCRHSILLLNKG
Subjt:  KPKEWIKWIAWAEYCGILIMWSAASFSVSSITNGAHFLTVLFTLPDGFSFWLIGI---------------STLSDGHRKIPTIIDLLEKCRHSILLLNKG

Query:  ILLILPFQMAAIHGQISEIHQLIPRLIDSYTQKP
        ILLI PF+MAAIHGQISEIHQLIPRLIDSYTQKP
Subjt:  ILLILPFQMAAIHGQISEIHQLIPRLIDSYTQKP

TYK19861.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]3.36e-0895.65Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        +YLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

TrEMBL top hitse value%identityAlignment
A0A0A0L0H8 Uncharacterized protein5.3e-4276.19Show/hide
Query:  IAWAEYCGILIMWSAASFSVSSITNGAHFLTVLFTLPDGFSFWLIGI---------------STLSDGHRKIPTIIDLLEKCRHSILLLNKGILLILPFQ
        I W    GILIMWSAASF VSSIT GAH LTVLFTL DGFSFWLIG+               ST SDGHRK PTIIDL EKCRHSILLLNKGILLI PF+
Subjt:  IAWAEYCGILIMWSAASFSVSSITNGAHFLTVLFTLPDGFSFWLIGI---------------STLSDGHRKIPTIIDLLEKCRHSILLLNKGILLILPFQ

Query:  MAAIHGQISEIHQLIPRLIDSYTQKP
        MAAIHGQISEIHQLIPRLIDSYTQKP
Subjt:  MAAIHGQISEIHQLIPRLIDSYTQKP

A0A5A7SMQ7 Ty3/gypsy retrotransposon protein6.1e-06100Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

A0A5A7TXP9 Ty3/gypsy retrotransposon protein6.1e-06100Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

A0A5D3B8Y6 Ty3/gypsy retrotransposon protein6.1e-06100Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

A0A5D3DYS4 Ty3/gypsy retrotransposon protein6.1e-06100Show/hide
Query:  MYLRCLCNDKPKEWIKWIAWAEY
        MYLRCLCNDKPKEWIKWIAWAEY
Subjt:  MYLRCLCNDKPKEWIKWIAWAEY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTTGAGATGCCTCTGTAATGATAAACCCAAAGAGTGGATTAAGTGGATAGCATGGGCTGAATATTGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGT
CTCTTCTATAACTAACGGTGCACACTTCCTAACTGTCCTTTTCACTTTACCCGATGGTTTCAGTTTCTGGTTAATAGGTATTTCAACCTTGTCAGATGGCCACAGGAAAA
TTCCAACTATTATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATCTTATTGATTCTCCCCTTTCAAATGGCAGCTATACATGGACAGATT
TCAGAAATCCACCAACTCATACCAAGATTGATAGATTCCTATACACAGAAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTTGAGATGCCTCTGTAATGATAAACCCAAAGAGTGGATTAAGTGGATAGCATGGGCTGAATATTGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGT
CTCTTCTATAACTAACGGTGCACACTTCCTAACTGTCCTTTTCACTTTACCCGATGGTTTCAGTTTCTGGTTAATAGGTATTTCAACCTTGTCAGATGGCCACAGGAAAA
TTCCAACTATTATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATCTTATTGATTCTCCCCTTTCAAATGGCAGCTATACATGGACAGATT
TCAGAAATCCACCAACTCATACCAAGATTGATAGATTCCTATACACAGAAACCATGA
Protein sequenceShow/hide protein sequence
MYLRCLCNDKPKEWIKWIAWAEYCGILIMWSAASFSVSSITNGAHFLTVLFTLPDGFSFWLIGISTLSDGHRKIPTIIDLLEKCRHSILLLNKGILLILPFQMAAIHGQI
SEIHQLIPRLIDSYTQKP