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IVF0019583 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019583
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24523807..24524510
RNA-Seq ExpressionIVF0019583
SyntenyIVF0019583
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.37e-2882.67Show/hide
Query:  SEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTFLKG
        SEGN LSSRTS  RPKKTRARMPLTQFSR GVKS PPTVSSLCFVLAISLSIFE  TLRTSTH  GM P+TF +G
Subjt:  SEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTFLKG

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.06e-4650.9Show/hide
Query:  FSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVS
        F  G K  PPT+ S C VL ISL IF ARTLRT T+T G++ DTF  GIG EAS LE EL E N LSS+ SS RP KTRARMP TQFSR G KSGPPTVS
Subjt:  FSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVS

Query:  SLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------------------------------LKGELRYDP
        SLC VL ISLSIF   TLRTSTH SGM P+TF                                                           L+ EL  D 
Subjt:  SLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------------------------------LKGELRYDP

Query:  KRSKRWPMLPTSGERSSDVRTH
        KRSKRWPM PT+GERSS VR H
Subjt:  KRSKRWPMLPTSGERSSDVRTH

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]2.47e-2745.66Show/hide
Query:  SQENASENASDSIFSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQF
        SQ++ASEN+  S+F    K      F  C V      I+++ +       SGI+  +  Q IGREASS E E+S+GN LSSR S   P+K R RMP TQF
Subjt:  SQENASENASDSIFSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQF

Query:  SRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF----------LKGELRYDPKRSKRWPML
          LGVK+GP  VS  C VL IS S F  HTLRTS +I G+  ++F           KGE R +PKRSK WP+L
Subjt:  SRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF----------LKGELRYDPKRSKRWPML

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]3.98e-3640.77Show/hide
Query:  MHLQQKKWTELKEFMCLSQENASENASDSIFSCGVKSDPPTVFSPCYVLAI---SLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELS
        MHLQ++K  EL++F C SQEN SENA DS FS   K   P  F P   +     S L+     +R+ T     +L T  +      +  +    EGN LS
Subjt:  MHLQQKKWTELKEFMCLSQENASENASDSIFSCGVKSDPPTVFSPCYVLAI---SLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELS

Query:  SRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------
        SRTS  RPKKTRARMP TQFSR G KS PPTVS+LC VL  SLSIF   T RTSTH  GM P+TF                                   
Subjt:  SRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------

Query:  -----------------------------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH
                                     L+GEL  DPK SKRWPMLPT GERSS  R H
Subjt:  -----------------------------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]4.01e-2955.7Show/hide
Query:  IFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHI
        I +ART RT T+T G+L +TFSQGIGREAS LE ELS+ N LSSR S  RPKK  +      FS    K+   TVSSL F+L ISL IF  HT RTSTH 
Subjt:  IFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHI

Query:  SGMFPNTF----------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH
          M P+ F          L+GELR DPK  KRWPML TSGE SS VR +
Subjt:  SGMFPNTF----------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.3e-3950.9Show/hide
Query:  FSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVS
        F  G K  PPT+ S C VL ISL IF ARTLRT T+T G++ DTF  GIG EAS LE EL E N LSS+ SS RP KTRARMP TQFSR G KSGPPTVS
Subjt:  FSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVS

Query:  SLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------------------------------LKGELRYDP
        SLC VL ISLSIF   TLRTSTH SGM P+TF                                                           L+ EL  D 
Subjt:  SLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------------------------------LKGELRYDP

Query:  KRSKRWPMLPTSGERSSDVRTH
        KRSKRWPM PT+GERSS VR H
Subjt:  KRSKRWPMLPTSGERSSDVRTH

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed4.8e-2345.66Show/hide
Query:  SQENASENASDSIFSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQF
        SQ++ASEN+  S+F    K      F  C V      I+++ +       SGI+  +  Q IGREASS E E+S+GN LSSR S   P+K R RMP TQF
Subjt:  SQENASENASDSIFSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQF

Query:  SRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF----------LKGELRYDPKRSKRWPML
          LGVK+GP  VS  C VL IS S F  HTLRTS +I G+  ++F           KGE R +PKRSK WP+L
Subjt:  SRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF----------LKGELRYDPKRSKRWPML

A0A5D3CQ36 Putative nuclease HARBI11.4e-2282.67Show/hide
Query:  SEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTFLKG
        SEGN LSSRTS  RPKKTRARMPLTQFSR GVKS PPTVSSLCFVLAISLSIFE  TLRTSTH  GM P+TF +G
Subjt:  SEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTFLKG

A0A5D3DFP2 Uncharacterized protein1.4e-3040.77Show/hide
Query:  MHLQQKKWTELKEFMCLSQENASENASDSIFSCGVKSDPPTVFSPCYVL---AISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELS
        MHLQ++K  EL++F C SQEN SENA DS FS   K   P  F P   +   + S L+     +R+ T     +L T  +      +  +    EGN LS
Subjt:  MHLQQKKWTELKEFMCLSQENASENASDSIFSCGVKSDPPTVFSPCYVL---AISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELS

Query:  SRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------
        SRTS  RPKKTRARMP TQFSR G KS PPTVS+LC VL  SLSIF   T RTSTH  GM P+TF                                   
Subjt:  SRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTF-----------------------------------

Query:  -----------------------------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH
                                     L+GEL  DPK SKRWPMLPT GERSS  R H
Subjt:  -----------------------------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH

A0A5D3DIF8 Gag/pol protein6.7e-2555.7Show/hide
Query:  IFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHI
        I +ART RT T+T G+L +TFSQGIGREAS LE ELS+ N LSSR S  RPKK       + FS    K+   TVSSL F+L ISL IF  HT RTSTH 
Subjt:  IFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRARMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHI

Query:  SGMFPNTF----------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH
          M P+ F          L+GELR DPK  KRWPML TSGE SS VR +
Subjt:  SGMFPNTF----------LKGELRYDPKRSKRWPMLPTSGERSSDVRTH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTGCAGCAAAAGAAATGGACTGAGCTCAAGGAATTCATGTGCTTGTCCCAAGAAAACGCGAGCGAGAACGCCTCAGACTCAATTTTCTCGTGTGGGGTAAAAAG
CGATCCTCCGACGGTTTTTTCCCCTTGCTACGTATTGGCCATAAGTCTTTTGATCTTCGAGGCTCGTACACTGAGGACCTTAACAAACACTTCTGGCATACTCCTTGACA
CGTTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGAGTGAACTGAGTGAAGGAAACGAGCTAAGCTCGAGGACTTCTAGTACTCGTCCTAAGAAAACACGAGCG
AGAATGCCTCTGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGCCATAAGTCTTTCGATCTTCGAGGATCATAC
TCTGAGGACCTCAACCCACATTTCTGGCATGTTCCCTAACACGTTTCTCAAGGGAGAACTGAGGTACGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTG
GCGAACGCTCGTCCGATGTCAGAACCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTGCAGCAAAAGAAATGGACTGAGCTCAAGGAATTCATGTGCTTGTCCCAAGAAAACGCGAGCGAGAACGCCTCAGACTCAATTTTCTCGTGTGGGGTAAAAAG
CGATCCTCCGACGGTTTTTTCCCCTTGCTACGTATTGGCCATAAGTCTTTTGATCTTCGAGGCTCGTACACTGAGGACCTTAACAAACACTTCTGGCATACTCCTTGACA
CGTTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGAGTGAACTGAGTGAAGGAAACGAGCTAAGCTCGAGGACTTCTAGTACTCGTCCTAAGAAAACACGAGCG
AGAATGCCTCTGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGCCATAAGTCTTTCGATCTTCGAGGATCATAC
TCTGAGGACCTCAACCCACATTTCTGGCATGTTCCCTAACACGTTTCTCAAGGGAGAACTGAGGTACGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTG
GCGAACGCTCGTCCGATGTCAGAACCCACTGA
Protein sequenceShow/hide protein sequence
MHLQQKKWTELKEFMCLSQENASENASDSIFSCGVKSDPPTVFSPCYVLAISLLIFEARTLRTLTNTSGILLDTFSQGIGREASSLESELSEGNELSSRTSSTRPKKTRA
RMPLTQFSRLGVKSGPPTVSSLCFVLAISLSIFEDHTLRTSTHISGMFPNTFLKGELRYDPKRSKRWPMLPTSGERSSDVRTH