; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0019588 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019588
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationtig00000135:13459..14873
RNA-Seq ExpressionIVF0019588
SyntenyIVF0019588
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049114.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.47e-23899.7Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
        MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP

Query:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
        FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
Subjt:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM

Query:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN
        HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+IHAN
Subjt:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN

Query:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Subjt:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

TYK17450.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.56e-23199.7Show/hide
Query:  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKL
        NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKL
Subjt:  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKL

Query:  FECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILS
        FECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILS
Subjt:  FECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILS

Query:  KMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYA
        KMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+IHANCLKGQSSYA
Subjt:  KMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYA

Query:  LHLVNLMIANDCKPSIATFCTIIDAFCKE
        LHLVNLMIANDCKPSIATFCTIIDAFCKE
Subjt:  LHLVNLMIANDCKPSIATFCTIIDAFCKE

XP_016899019.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like [Cucumis melo]2.62e-23899.7Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
        MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP

Query:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
        FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
Subjt:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM

Query:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN
        HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+IHAN
Subjt:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN

Query:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Subjt:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

XP_031738963.1 pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus]3.78e-22394.12Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSS--DSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF
        MFVNVRRLQNSFKVHWSSSLSSSQTLIPK FNEY  SS  DSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRV+VGLSKA+KL QGYVLKGLSRNF
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSS--DSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF

Query:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS
        CPFLLVKIMKLFECRETA+AFFKLAFKDDSEETV+SCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHR+YESD+SVL+TLMRAF+KS
Subjt:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS

Query:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH
        EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNF FNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+I+
Subjt:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH

Query:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        ANCLKGQSSYALHL+NLMI N CKPSIATFCTIIDAFCKE
Subjt:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

XP_038892548.1 pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida]1.43e-20186.76Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSS--DSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF
        M VNVRRLQNSFKVHWSSSLS SQTLI KF NEY  SS  DS T +FDYIAQFLPSNDGTLKLISVNSV TNDRRRV+VGLSKA+KL QGY LKGLSRNF
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSS--DSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF

Query:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS
        CPFLLV+IMKLFECRETAFAFFKLAFKDDSEETV+SCC++AHLLAAE+LRFLAQDI+SWVVARIGPGRSKNLAAFMW+GH  YESD SVL+TLMRAFMKS
Subjt:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS

Query:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH
        EMHFEALEILSKMREVGVTPN SAISILFRLL+RAGD GAVWKLFGD+VRKGP PNN++FN++ILEFCRKGWTRIGE LLHVM KFRCEPDVYSYNI+I+
Subjt:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH

Query:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        ANCLKG+SS ALHLVNLMIAN CKPSIAT  TIIDAFCKE
Subjt:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

TrEMBL top hitse value%identityAlignment
A0A0A0L7U2 Uncharacterized protein6.0e-18194.12Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF
        MFVNVRRLQNSFKVHWSSSLSSSQTLIPK FNEY    SSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRV+VGLSKA+KL QGYVLKGLSRNF
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF

Query:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS
        CPFLLVKIMKLFECRETA+AFFKLAFKDDSEETV+SCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHR+YESD+SVL+TLMRAF+KS
Subjt:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS

Query:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH
        EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNF FNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+I+
Subjt:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH

Query:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        ANCLKGQSSYALHL+NLMI N CKPSIATFCTIIDAFCKE
Subjt:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

A0A1S4DSR0 pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like1.5e-19299.7Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
        MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP

Query:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
        FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
Subjt:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM

Query:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN
        HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+IHAN
Subjt:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN

Query:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Subjt:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

A0A5A7U1D1 Pentatricopeptide repeat-containing protein1.5e-19299.7Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
        MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCP

Query:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
        FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM
Subjt:  FLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEM

Query:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN
        HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+IHAN
Subjt:  HFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHAN

Query:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Subjt:  CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

A0A5D3D1G3 Pentatricopeptide repeat-containing protein1.9e-18799.7Show/hide
Query:  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKL
        NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKL
Subjt:  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKL

Query:  FECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILS
        FECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILS
Subjt:  FECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILS

Query:  KMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYA
        KMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNI+IHANCLKGQSSYA
Subjt:  KMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYA

Query:  LHLVNLMIANDCKPSIATFCTIIDAFCKE
        LHLVNLMIANDCKPSIATFCTIIDAFCKE
Subjt:  LHLVNLMIANDCKPSIATFCTIIDAFCKE

A0A6J1IVM8 pentatricopeptide repeat-containing protein At1g09900-like4.3e-15582.06Show/hide
Query:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF
        MFV VR LQNSFKVHWSSSLS  QTL PKF N+Y    SSDSST +FDYIAQFLPSNDGTLKL+SV+SVTTNDRRR++VGLSKA+KL QGY LK LSRNF
Subjt:  MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNF

Query:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS
        CPF LVKIMKLFECRETAFAFFKLAF DD E+TV+SCCV+AHLLAAE+   LAQDIVSW+ ARIGP RSKNLAAFMWEGH  YESD SVLNTLMR FMKS
Subjt:  CPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKS

Query:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH
        EMH+EALEILSKMREVGV PN SAISILFRLL+RAGD GAVWKLFGDVVRKGPCPNN++FN++ILEFCRKGW+ IGE LLHVM KFRCEPDVYSYNI+I+
Subjt:  EMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIH

Query:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        A CL+GQSS ALH VNLMIAN CKPSIATF  +IDAFCKE
Subjt:  ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

SwissProt top hitse value%identityAlignment
P0C894 Putative pentatricopeptide repeat-containing protein At2g021503.7e-1825Show/hide
Query:  IMKLFECRETAFAFFKLAF-KDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEA
        +++L E  + AF FFK +  ++  + +V+S C++AH+L   ++ + A  ++  +V         ++   +W    +    F V + L    +   M  EA
Subjt:  IMKLFECRETAFAFFKLAF-KDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEA

Query:  LEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFR-------------------
        ++  SKM+   V P   + + L     + G    V + F D++  G  P  F +N++I   C++G       L   M KFR                   
Subjt:  LEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFR-------------------

Query:  -----------------CEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKEDM
                         CEPDV +YN LI+  C  G+    L     M  N  KP++ ++ T++DAFCKE M
Subjt:  -----------------CEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKEDM

Q3EDF8 Pentatricopeptide repeat-containing protein At1g099003.4e-1631.61Show/hide
Query:  DFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGK
        D    N L+    K     EA++ L+ M   G  PN    +I+ R +   G      KL  D++RKG  P+   FN+LI   CRKG       +L  M +
Subjt:  DFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGK

Query:  FRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
          C+P+  SYN L+H  C + +   A+  +  M++  C P I T+ T++ A CK+
Subjt:  FRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

Q9LQ16 Pentatricopeptide repeat-containing protein At1g629105.8e-1630.13Show/hide
Query:  ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVM
        E+D  + NT++    K +   +AL + ++M   G+ P+    S L   L   G      +L  D++ +   PN   F+ LI  F ++G     E L   M
Subjt:  ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVM

Query:  GKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK
         K   +PD+++Y+ LI+  C+  +   A H+  LMI+ DC P++ T+ T+I  FCK
Subjt:  GKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK

Q9LVQ5 Pentatricopeptide repeat-containing protein At5g558401.0e-1523.79Show/hide
Query:  AFAFFKLAFKDDSEET---VKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMR
        A  F K   K    ET   V+  C+  H+L   ++   A+ I+  +   +  G+S  +   +   +R+  S+ SV + L+R +++  M  ++LEI   M 
Subjt:  AFAFFKLAFKDDSEET---VKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMR

Query:  EVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHL
          G  P+    + +   ++++G+  +VW    +++++  CP+   FN+LI   C +G       L+  M K    P + +YN ++H  C KG+   A+ L
Subjt:  EVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHL

Query:  VNLMIANDCKPSIATFCTIIDAFCKED
        ++ M +      + T+  +I   C+ +
Subjt:  VNLMIANDCKPSIATFCTIIDAFCKED

Q9SXD1 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial1.0e-1527.33Show/hide
Query:  SKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFC
        +K +  FM   H     D    NTL++ F K +   E +E+  +M + G+  N    +IL + L +AGDC    ++F ++V  G  PN   +N L+   C
Subjt:  SKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFC

Query:  RKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        + G       +   + + + EP +Y+YNI+I   C  G+      L   +     KP +  + T+I  FC++
Subjt:  RKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

Arabidopsis top hitse value%identityAlignment
AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.4e-1731.61Show/hide
Query:  DFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGK
        D    N L+    K     EA++ L+ M   G  PN    +I+ R +   G      KL  D++RKG  P+   FN+LI   CRKG       +L  M +
Subjt:  DFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGK

Query:  FRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
          C+P+  SYN L+H  C + +   A+  +  M++  C P I T+ T++ A CK+
Subjt:  FRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

AT1G62670.1 rna processing factor 27.1e-1727.33Show/hide
Query:  SKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFC
        +K +  FM   H     D    NTL++ F K +   E +E+  +M + G+  N    +IL + L +AGDC    ++F ++V  G  PN   +N L+   C
Subjt:  SKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFC

Query:  RKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
        + G       +   + + + EP +Y+YNI+I   C  G+      L   +     KP +  + T+I  FC++
Subjt:  RKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE

AT1G62910.1 Pentatricopeptide repeat (PPR) superfamily protein4.1e-1730.13Show/hide
Query:  ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVM
        E+D  + NT++    K +   +AL + ++M   G+ P+    S L   L   G      +L  D++ +   PN   F+ LI  F ++G     E L   M
Subjt:  ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVM

Query:  GKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK
         K   +PD+++Y+ LI+  C+  +   A H+  LMI+ DC P++ T+ T+I  FCK
Subjt:  GKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK

AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.1e-1730.13Show/hide
Query:  ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVM
        E+D  +  T++ A    +   +AL + ++M   G+ PN    + L R L   G      +L  D++ +   PN   F+ LI  F ++G     E L   M
Subjt:  ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVM

Query:  GKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK
         K   +PD+++Y+ LI+  C+  +   A H+  LMI+ DC P++ T+ T+I  FCK
Subjt:  GKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK

AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.6e-1925Show/hide
Query:  IMKLFECRETAFAFFKLAF-KDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEA
        +++L E  + AF FFK +  ++  + +V+S C++AH+L   ++ + A  ++  +V         ++   +W    +    F V + L    +   M  EA
Subjt:  IMKLFECRETAFAFFKLAF-KDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEA

Query:  LEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFR-------------------
        ++  SKM+   V P   + + L     + G    V + F D++  G  P  F +N++I   C++G       L   M KFR                   
Subjt:  LEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFR-------------------

Query:  -----------------CEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKEDM
                         CEPDV +YN LI+  C  G+    L     M  N  KP++ ++ T++DAFCKE M
Subjt:  -----------------CEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKEDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTCAATGTGCGTCGCCTGCAGAACTCTTTTAAGGTACACTGGTCTTCTTCTCTGAGTTCATCTCAAACCCTAATTCCGAAATTCTTTAACGAGTATTATTATTC
GTCTGATTCGAGTACTCGTTCTTTTGATTATATTGCTCAATTTTTGCCTTCCAACGATGGTACTTTGAAATTGATCTCTGTGAATTCCGTGACTACAAATGACCGCCGTA
GAGTCAGTGTTGGGTTATCCAAAGCGGTTAAGCTGCCTCAGGGATACGTATTGAAGGGATTATCGAGAAATTTCTGTCCATTTTTACTGGTCAAGATTATGAAACTGTTT
GAATGTCGGGAAACCGCGTTTGCGTTCTTCAAGCTAGCATTTAAGGACGATTCTGAAGAAACTGTTAAGTCTTGTTGTGTGCTGGCACATCTCTTAGCTGCAGAACAACT
TCGTTTTCTAGCGCAAGATATTGTTTCGTGGGTTGTTGCTAGAATTGGTCCAGGAAGGAGCAAGAATTTGGCGGCATTTATGTGGGAAGGTCACCGTATGTACGAATCTG
ATTTTTCAGTGTTGAACACTCTAATGCGGGCGTTTATGAAGTCAGAAATGCATTTTGAGGCTTTAGAAATATTGAGTAAGATGCGGGAGGTGGGAGTGACGCCAAATCCA
TCGGCCATTTCGATTCTTTTTAGATTGCTGATTAGAGCTGGCGATTGTGGTGCTGTATGGAAGTTGTTTGGAGATGTGGTTCGAAAGGGACCTTGCCCTAATAATTTTAT
ATTTAACTTATTGATTCTTGAGTTTTGTAGAAAAGGTTGGACTAGGATTGGAGAAGCTCTGTTGCACGTAATGGGCAAATTTAGATGTGAACCAGATGTTTATTCCTATA
ATATCCTGATACATGCGAACTGCTTAAAAGGGCAATCATCATATGCACTTCATTTGGTGAATCTAATGATCGCAAATGACTGCAAACCTAGCATTGCCACATTCTGTACC
ATCATTGATGCCTTCTGCAAGGAGGATATGGAAAGGAGGAGGATGGGGATCGATTATTAA
mRNA sequenceShow/hide mRNA sequence
ACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTGTTTCGCCGGCATCTACGCTTCAGCAACTCGCCGTCCGGCGAGTTATCTCCGATCATACTGCGGTTTGAAATGG
AATTCGGTAGCTTGTAATTCGGAATCTCTTATAAGTTGTGTCGCCTTCCAATGTTTGTCAATGTGCGTCGCCTGCAGAACTCTTTTAAGGTACACTGGTCTTCTTCTCTG
AGTTCATCTCAAACCCTAATTCCGAAATTCTTTAACGAGTATTATTATTCGTCTGATTCGAGTACTCGTTCTTTTGATTATATTGCTCAATTTTTGCCTTCCAACGATGG
TACTTTGAAATTGATCTCTGTGAATTCCGTGACTACAAATGACCGCCGTAGAGTCAGTGTTGGGTTATCCAAAGCGGTTAAGCTGCCTCAGGGATACGTATTGAAGGGAT
TATCGAGAAATTTCTGTCCATTTTTACTGGTCAAGATTATGAAACTGTTTGAATGTCGGGAAACCGCGTTTGCGTTCTTCAAGCTAGCATTTAAGGACGATTCTGAAGAA
ACTGTTAAGTCTTGTTGTGTGCTGGCACATCTCTTAGCTGCAGAACAACTTCGTTTTCTAGCGCAAGATATTGTTTCGTGGGTTGTTGCTAGAATTGGTCCAGGAAGGAG
CAAGAATTTGGCGGCATTTATGTGGGAAGGTCACCGTATGTACGAATCTGATTTTTCAGTGTTGAACACTCTAATGCGGGCGTTTATGAAGTCAGAAATGCATTTTGAGG
CTTTAGAAATATTGAGTAAGATGCGGGAGGTGGGAGTGACGCCAAATCCATCGGCCATTTCGATTCTTTTTAGATTGCTGATTAGAGCTGGCGATTGTGGTGCTGTATGG
AAGTTGTTTGGAGATGTGGTTCGAAAGGGACCTTGCCCTAATAATTTTATATTTAACTTATTGATTCTTGAGTTTTGTAGAAAAGGTTGGACTAGGATTGGAGAAGCTCT
GTTGCACGTAATGGGCAAATTTAGATGTGAACCAGATGTTTATTCCTATAATATCCTGATACATGCGAACTGCTTAAAAGGGCAATCATCATATGCACTTCATTTGGTGA
ATCTAATGATCGCAAATGACTGCAAACCTAGCATTGCCACATTCTGTACCATCATTGATGCCTTCTGCAAGGAGGATATGGAAAGGAGGAGGATGGGGATCGATTATTAA
Protein sequenceShow/hide protein sequence
MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLF
ECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNP
SAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNILIHANCLKGQSSYALHLVNLMIANDCKPSIATFCT
IIDAFCKEDMERRRMGIDY