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IVF0019625 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019625
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDual-specificity RNA methyltransferase RlmN isoform X1
Genome locationchr04:22194350..22195555
RNA-Seq ExpressionIVF0019625
SyntenyIVF0019625
Gene Ontology termsGO:0030488 - tRNA methylation (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045130.1 hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa]4.06e-0638.79Show/hide
Query:  MLRATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE-PAGWPM---------SVRAQPRSLQTRPEASMSVQRHTMTVRSVM
        + R T+CA      GA  T  ARPC   ++K+ +    F      S  +QK  E P   P          S  A PR +QT PEASM++ + TMTVRSVM
Subjt:  MLRATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE-PAGWPM---------SVRAQPRSLQTRPEASMSVQRHTMTVRSVM

Query:  VGPECSRVKCKGPNRL
          P+CS+V C G  R+
Subjt:  VGPECSRVKCKGPNRL

TYK19896.1 dual-specificity RNA methyltransferase RlmN isoform X1 [Cucumis melo var. makuwa]3.19e-2678.75Show/hide
Query:  RARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE----------PAGWPMSVRAQPRSLQTRPEASMSVQRHTMTVRSVM
        RARPCP KAEKSP+ASRTFYDGRD+SGRLQKTRE            GWPMSVRAQPRSLQTRP+ASMSVQRHTM+VRSVM
Subjt:  RARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE----------PAGWPMSVRAQPRSLQTRPEASMSVQRHTMTVRSVM

TYK22843.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.97e-3059.66Show/hide
Query:  RDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVC--------HGQPRTPM-----PST-------AHAHGHMRMAWRQAQAC
        +D  R+ P CAHGSLRIGTEEPQRG +TAHGWPHH   TLACASRGQ QH          HG PR P+     PST       A AH H + A   + AC
Subjt:  RDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVC--------HGQPRTPM-----PST-------AHAHGHMRMAWRQAQAC

Query:  TRTGMHAHQMPPMLVQARR
        TRTGMHAHQMPPML QARR
Subjt:  TRTGMHAHQMPPMLVQARR

TrEMBL top hitse value%identityAlignment
A0A5A7TPM2 Uncharacterized protein1.8e-0439.47Show/hide
Query:  RATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE-PAGWP---------MSVRAQPRSLQTRPEASMSVQRHTMTVRSVMVG
        R T+CA      GA  T  ARPC   ++K+ +    F  G      +QK  E P   P          S  A PR +QT PEASM++ + TMTVRSVM  
Subjt:  RATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE-PAGWP---------MSVRAQPRSLQTRPEASMSVQRHTMTVRSVMVG

Query:  PECSRVKCKGPNRL
        P+CS+V C G  R+
Subjt:  PECSRVKCKGPNRL

A0A5D3D8I4 Dual-specificity RNA methyltransferase RlmN isoform X15.1e-2378.75Show/hide
Query:  RARPCPPKAEKSPEASRTFYDGRDDSGRLQKT----------REPAGWPMSVRAQPRSLQTRPEASMSVQRHTMTVRSVM
        RARPCP KAEKSP+ASRTFYDGRD+SGRLQKT          RE  GWPMSVRAQPRSLQTRP+ASMSVQRHTM+VRSVM
Subjt:  RARPCPPKAEKSPEASRTFYDGRDDSGRLQKT----------REPAGWPMSVRAQPRSLQTRPEASMSVQRHTMTVRSVM

A0A5D3DH07 Ty3-gypsy retrotransposon protein2.1e-2442.29Show/hide
Query:  RDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVC--------HGQPRTPM-----PST-------AHAHGHMRMAWRQAQAC
        +D  R+ P CAHGSLRIGTEEPQRG +TAHGWPHH   TLACASRGQ QH          HG PR P+     PST       A AH H + A   + AC
Subjt:  RDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVC--------HGQPRTPM-----PST-------AHAHGHMRMAWRQAQAC

Query:  TRTGMHAHQMPPMLVQARRARQHASAPLTCTATPGTNAAQTAHAAGSRAWHRRAHPPDGRPGTHKQGARGMLRATLCAQRTHATGARGTPRARPCPPKAE
        TRTGMHAHQMPPML QARR              P   A+      G  A H    P   RP   +  A G+ RA LC                P P + +
Subjt:  TRTGMHAHQMPPMLVQARRARQHASAPLTCTATPGTNAAQTAHAAGSRAWHRRAHPPDGRPGTHKQGARGMLRATLCAQRTHATGARGTPRARPCPPKAE

Query:  KSPEASRTFYDGRDDSGRLQKTREPAG
           E S T    R+DS R     + AG
Subjt:  KSPEASRTFYDGRDDSGRLQKTREPAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGC
CCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGACACCAATGCCCAGCACAGCCCATG
CGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAG
CATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGG
CCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTC
CGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACCAGCCGGATGGCCTATGTCGGTG
CGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAA
ATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGC
CCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGACACCAATGCCCAGCACAGCCCATG
CGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAG
CATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGG
CCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTC
CGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACCAGCCGGATGGCCTATGTCGGTG
CGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAA
ATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG
Protein sequenceShow/hide protein sequence
MSRPVRRHRDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVCHGQPRTPMPSTAHAHGHMRMAWRQAQACTRTGMHAHQMPPMLVQARRARQ
HASAPLTCTATPGTNAAQTAHAAGSRAWHRRAHPPDGRPGTHKQGARGMLRATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTREPAGWPMSV
RAQPRSLQTRPEASMSVQRHTMTVRSVMVGPECSRVKCKGPNRLGSSR