; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0019641 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019641
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr01:25995700..25996215
RNA-Seq ExpressionIVF0019641
SyntenyIVF0019641
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035946.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.96e-3857.06Show/hide
Query:  QEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVH----------RLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSL
        +E  HLKYV  EKV I NMLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R LKYV AEKVVVSNM       
Subjt:  QEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVH----------RLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSL

Query:  SQICCSREGRRLKYVAPG-----------RSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQ
             SREGRRLKYV              RST SSSCGASNHHLR A+SSSSM N+A DHHLQ
Subjt:  SQICCSREGRRLKYVAPG-----------RSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQ

KAA0059640.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.77e-105100Show/hide
Query:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
        CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
Subjt:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE

Query:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
        GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
Subjt:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]1.95e-5358.56Show/hide
Query:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS
        MCCS+EA HLK+V  EKV+  NML  RR  SQ CYSR+  RLKYV  EKVI+SNMLQ RRSSSQICC++E R LKYVA EKVVVSNMLQP         S
Subjt:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS

Query:  REGRRLKYVA-----------PGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQ
        +EGR LKYV            P RS+    C   N HL    + + +   A DHHLQC   QAIIIFNNAA+TIIIFKVAQ
Subjt:  REGRRLKYVA-----------PGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQ

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]5.55e-4472.48Show/hide
Query:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS
        +C  QE  HLKYVAVEKVV+ NMLQLRRS  Q C SRE  RLKYVV EK++VSNMLQ R SSS ICC+QE R LKYVA EKV+VSNMLQ R S SQICCS
Subjt:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS

Query:  REGRRLKYV
        +E RRLKY 
Subjt:  REGRRLKYV

TYK08171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.77e-105100Show/hide
Query:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
        CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
Subjt:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE

Query:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
        GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
Subjt:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS

TrEMBL top hitse value%identityAlignment
A0A5A7T154 Ty3-gypsy retrotransposon protein3.9e-3257.06Show/hide
Query:  QEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREV----------HRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSL
        +E  HLKYV  EKV I NMLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R LKYV AEKVVVSNM       
Subjt:  QEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREV----------HRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSL

Query:  SQICCSREGRRLKYVA-----------PGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQ
             SREGRRLKYV              RST SSSCGASNHHLR A+SSSSM N+A DHHLQ
Subjt:  SQICCSREGRRLKYVA-----------PGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQ

A0A5A7UWX8 Ty3-gypsy retrotransposon protein3.6e-86100Show/hide
Query:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
        CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
Subjt:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE

Query:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
        GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
Subjt:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS

A0A5A7VE10 Uncharacterized protein4.6e-3367.8Show/hide
Query:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS
        +C  QE  HLKYVAVEKVV+ NMLQLRRS  Q C SRE  RLKYVV EK++VSNMLQ R SSS ICC+QE R LKYVA EKV+VSNMLQ R S SQICCS
Subjt:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS

Query:  REGRRLKYVAPGRSTPSS
        +E RRLKY    +   S+
Subjt:  REGRRLKYVAPGRSTPSS

A0A5D3BNW3 Uncharacterized protein1.2e-4158.56Show/hide
Query:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS
        MCCS+EA HLK+V  EKV+  NML  RR  SQ CYSR+  RLKYV  EKVI+SNMLQ RRSSSQICC++E R LKYVA EKVVVSNMLQP         S
Subjt:  MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS

Query:  REGRRLKYV-----------APGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQ
        +EGR LKYV            P RS+    C   N HL    + + +   A DHHLQC   QAIIIFNNAA+TIIIFKVAQ
Subjt:  REGRRLKYV-----------APGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQ

A0A5D3C8K3 Ty3-gypsy retrotransposon protein3.6e-86100Show/hide
Query:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
        CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE
Subjt:  CSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSRE

Query:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
        GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS
Subjt:  GRRLKYVAPGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGCAGCCAAGAAGCTCATCATCTCAAATATGTTGCAGTTGAGAAGGTTGTCATCTTAAATATGTTACAGCTTAGAAGGTCGATATCTCAAACATGTTACAGCCG
AGAAGTTCATCGCCTCAAATATGTTGTAACCGAGAAGGTCATCGTCTCAAATATGTTGCAGCCAAGAAGGTCGTCGTCTCAAATATGTTGTAACCAAGAAATTCGTCATC
TCAAATATGTTGCAGCTGAGAAGGTCGTCGTCTCAAATATGTTGCAGCCGAGAAGGTCGTTGTCTCAAATATGTTGTAGTCGAGAAGGTCGTCGTCTCAAATATGTTGCA
CCGGGGCGATCAACACCTTCATCTTCATGTGGCGCAAGTAATCATCATCTTCGGTGTGCACAATCATCCTCTTCAATGTCGAACAACGCAGACGATCATCATCTTCAATG
CAACGCGACGCAGGCAATCATCATCTTCAATAACGCAGCCCAGACGATCATCATCTTCAAGGTGGCGCAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGCAGCCAAGAAGCTCATCATCTCAAATATGTTGCAGTTGAGAAGGTTGTCATCTTAAATATGTTACAGCTTAGAAGGTCGATATCTCAAACATGTTACAGCCG
AGAAGTTCATCGCCTCAAATATGTTGTAACCGAGAAGGTCATCGTCTCAAATATGTTGCAGCCAAGAAGGTCGTCGTCTCAAATATGTTGTAACCAAGAAATTCGTCATC
TCAAATATGTTGCAGCTGAGAAGGTCGTCGTCTCAAATATGTTGCAGCCGAGAAGGTCGTTGTCTCAAATATGTTGTAGTCGAGAAGGTCGTCGTCTCAAATATGTTGCA
CCGGGGCGATCAACACCTTCATCTTCATGTGGCGCAAGTAATCATCATCTTCGGTGTGCACAATCATCCTCTTCAATGTCGAACAACGCAGACGATCATCATCTTCAATG
CAACGCGACGCAGGCAATCATCATCTTCAATAACGCAGCCCAGACGATCATCATCTTCAAGGTGGCGCAGTCGTGA
Protein sequenceShow/hide protein sequence
MCCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVHRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVA
PGRSTPSSSCGASNHHLRCAQSSSSMSNNADDHHLQCNATQAIIIFNNAAQTIIIFKVAQS