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IVF0019669 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019669
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:22963969..22964541
RNA-Seq ExpressionIVF0019669
SyntenyIVF0019669
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]9.34e-4376.29Show/hide
Query:  KSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKR
        +SH A KGLLHKSFPYYDDLSYVF  D  TGA SETF D  SNV NMFNDGVPL +SH++DI TIYSQGVHMSLD++FG RAGQ SER+N SSGSKR
Subjt:  KSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKR

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]2.78e-4874.04Show/hide
Query:  FGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGS
        F  W++SH   KGLL+KSFPYYDD+SYVF  DQ T ARSETF D  SN+PNMFNDGVPL +SHHEDIPT+YSQGV MSLD+MFGTRAGQ SER+NCSS S
Subjt:  FGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGS

Query:  KRPE
        KR +
Subjt:  KRPE

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.01e-4373.79Show/hide
Query:  LFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSG
        L G W  SH A KGLLHKSFPYYDDLSYVF  D+ T  RSETF    SNVPNMFNDGVPL +SH++DIP +YSQGVHMS+D+MFG RAGQ SER+NCSSG
Subjt:  LFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSG

Query:  SKR
        SKR
Subjt:  SKR

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]4.05e-4078.89Show/hide
Query:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRA
        R+LF SWVKSH ATKGLLHKSFPYYDDLSYVF  D+ TGARSETFVD  SNVPNMFND +PL +SH EDIPT+YSQGVH+S D+MFG RA
Subjt:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRA

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]7.90e-4875.24Show/hide
Query:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCS
        R+LF SW+KSH A KGLLHKSFPYYDDLSYVF  D+ TGARSETF +  SNV NMFND +PL +SH EDIPT+YSQGVHMS D+MFG RAGQ SER+NCS
Subjt:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCS

Query:  SGSKR
        S SKR
Subjt:  SGSKR

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859536.5e-3875.24Show/hide
Query:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCS
        R+LF SW+KSH A KGLLHKSFPYYDDLSYVF  D+ TGARSETF +  SNV NMFND +PL +SH EDIPT+YSQGVHMS D+MFG RAGQ SER+NCS
Subjt:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCS

Query:  SGSKR
        S SKR
Subjt:  SGSKR

A0A5A7U0H7 Retrotransposon protein6.5e-3875.24Show/hide
Query:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCS
        R+LF SW+KSH A KGLLHKSFPYYDDLSYVF  D+ TGARSETF +  SNV NMFND +PL +SH EDIPT+YSQGVHMS D+MFG RAGQ SER+NCS
Subjt:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCS

Query:  SGSKR
        S SKR
Subjt:  SGSKR

A0A5A7USN6 Putative nuclease HARBI18.8e-3573.79Show/hide
Query:  LFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSG
        L G W  SH A KGLLHKSFPYYDDLSYVF  D+ T  RSETF    SNVPNMFNDGVPL +SH++DIP +YSQGVHMS+D+MFG RAGQ SER+NCSSG
Subjt:  LFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSG

Query:  SKR
        SKR
Subjt:  SKR

A0A5D3CVB7 Retrotransposon protein2.5e-3774.04Show/hide
Query:  FGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGS
        F  W++SH   KGLL+KSFPYYDD+SYVF  DQ T ARSETF D  SN+PNMFNDGVPL +SHHEDIPT+YSQGV MSLD+MFGTRAGQ SER+NCSS S
Subjt:  FGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGS

Query:  KRPE
        KR +
Subjt:  KRPE

A0A5D3DG22 Retrotransposon protein1.3e-3378.89Show/hide
Query:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRA
        R+LF SWVKSH ATKGLLHKSFPYYDDLSYVF  D+ TGARSETFVD  SNVPNMFND +PL +SH EDIPT+YSQGVH+S D+MFG RA
Subjt:  RELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCGTCGCATACGGGAGTTGTTTGGTAGTTGGGTAAAGAGTCATTCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTATCTTATGTCTT
TGACATAGATCAAACAACAGGAGCACGTTCAGAGACCTTCGTTGATGCAAGATCTAATGTGCCGAACATGTTTAATGATGGTGTTCCCCTCAGTAATTCACATCATGAAG
ACATCCCAACGATATATAGCCAAGGAGTGCATATGTCACTAGATAAGATGTTCGGAACACGTGCAGGTCAAGTAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGG
CCAGAAACGAGATTGGCTAAAAGAGAAACGTGCAACGGAGGTCGAATTGCATGCTGGAGTTGTGAAACAGCTACAAGATATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATCGTCGCATACGGGAGTTGTTTGGTAGTTGGGTAAAGAGTCATTCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTATCTTATGTCTT
TGACATAGATCAAACAACAGGAGCACGTTCAGAGACCTTCGTTGATGCAAGATCTAATGTGCCGAACATGTTTAATGATGGTGTTCCCCTCAGTAATTCACATCATGAAG
ACATCCCAACGATATATAGCCAAGGAGTGCATATGTCACTAGATAAGATGTTCGGAACACGTGCAGGTCAAGTAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGG
CCAGAAACGAGATTGGCTAAAAGAGAAACGTGCAACGGAGGTCGAATTGCATGCTGGAGTTGTGAAACAGCTACAAGATATCCCTAA
Protein sequenceShow/hide protein sequence
MHRRIRELFGSWVKSHSATKGLLHKSFPYYDDLSYVFDIDQTTGARSETFVDARSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKR
PETRLAKRETCNGGRIACWSCETATRYP