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IVF0019742 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019742
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr07:15493964..15494203
RNA-Seq ExpressionIVF0019742
SyntenyIVF0019742
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045358.1 retrotransposon protein [Cucumis melo var. makuwa]1.95e-2994.74Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPST TSM HDAGSSRPSKK+
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK

KAA0051721.1 uncharacterized protein E6C27_scaffold60G001070 [Cucumis melo var. makuwa]1.72e-2889.47Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK
        MGSQT +D EEDDM+INLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRP KK+
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK

KAA0056667.1 retrotransposon protein [Cucumis melo var. makuwa]9.93e-51100Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]8.30e-2990.32Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFR
        MGSQTARDTEEDDM INLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKK+    R
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFR

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]5.28e-50100Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN

TrEMBL top hitse value%identityAlignment
A0A0A0LY11 Uncharacterized protein1.6e-2578.48Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSM HDA  +RPSKKKT+IFRGPH HIS KYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN

A0A1S3CI24 uncharacterized protein At2g29880-like3.1e-37100Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN

A0A5D3C2H8 Retrotransposon protein3.1e-37100Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN

A0A5D3C7T4 Uncharacterized protein1.1e-2194.74Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK
        M SQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSRPSKK+
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein8.3e-2296.49Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK
        MGSQTARDTEEDDM INLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKK+
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCACAGACTGCAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACAT
GCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAAAAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCACGCAAGTATGCGA
GAAACTTCCAAGGAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCACAGACTGCAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACAT
GCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAAAAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCACGCAAGTATGCGA
GAAACTTCCAAGGAAATTAG
Protein sequenceShow/hide protein sequence
MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVIFRGPHGHISRKYARNFQGN