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IVF0019763 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019763
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr01:20222350..20222682
RNA-Seq ExpressionIVF0019763
SyntenyIVF0019763
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045378.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]9.89e-4671.84Show/hide
Query:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK
        AAKVLQS YFWPTLF+D+RNFVV CD+CQRTGNM H DEMPQQPILEIELF+VWGIDFM  FPQSG ++YILL + YV K  EAISC KND I +  F K
Subjt:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK

Query:  EHL
         ++
Subjt:  EHL

KAA0056726.1 Integrase, catalytic core [Cucumis melo var. makuwa]5.36e-4567.27Show/hide
Query:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS
        M AKVLQ+GYFWPTLF+D+RNF+V CDR QRT NM H +EM Q+PILEIELFNVWGIDFM  FPQS  ++YILL VDYV K VEAIS  KNDVIT+  F 
Subjt:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS

Query:  KEHLLEFWDT
        K ++   + T
Subjt:  KEHLLEFWDT

TYJ96947.1 integrase [Cucumis melo var. makuwa]5.01e-4470.87Show/hide
Query:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK
        AAKVLQS YFWPTLF+D+RNFVV CD+CQRT NM H DEMPQQPILEIELF+VWGIDFM  FPQSG ++YILL ++YV K  EAISC KND I +  F K
Subjt:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK

Query:  EHL
         ++
Subjt:  EHL

WP_217833161.1 DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]1.63e-3659.63Show/hide
Query:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK
        AAKVLQSGYFWPTLFKD R + V CDRCQRTGN+ + +EMP   +LE+ELF+VWGIDFM  FP S    YIL+ VDYV K VEA +C KND  T+  F K
Subjt:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK

Query:  EHLLEFWDT
        + +   + T
Subjt:  EHLLEFWDT

XP_016900336.1 PREDICTED: uncharacterized mitochondrial protein AtMg00750-like [Cucumis melo]1.65e-79100Show/hide
Query:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS
        MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS
Subjt:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS

Query:  KEHLLEFWDT
        KEHLLEFWDT
Subjt:  KEHLLEFWDT

TrEMBL top hitse value%identityAlignment
A0A1S4DWG6 uncharacterized mitochondrial protein AtMg00750-like1.1e-59100Show/hide
Query:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS
        MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS
Subjt:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS

Query:  KEHLLEFWDT
        KEHLLEFWDT
Subjt:  KEHLLEFWDT

A0A2P6R5R7 Putative nucleotidyltransferase, Ribonuclease H2.6e-2959.63Show/hide
Query:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK
        A KVL+SG+FWPTLFKD   F V+CDRCQRTGN+   D+MPQ PIL +E+F+VWGIDFM  FP S  YLYILL VDYV K VEA +   ND   + +F K
Subjt:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK

Query:  EHLLEFWDT
        EH+   + T
Subjt:  EHLLEFWDT

A0A5A7TR90 Retrovirus-related Pol polyprotein from transposon 412 family3.7e-3671.84Show/hide
Query:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK
        AAKVLQS YFWPTLF+D+RNFVV CD+CQRTGNM H DEMPQQPILEIELF+VWGIDFM  FPQSG ++YILL + YV K  EAISC KND I +  F K
Subjt:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK

Query:  EHL
         ++
Subjt:  EHL

A0A5D3BCU9 Integrase8.2e-3670.87Show/hide
Query:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK
        AAKVLQS YFWPTLF+D+RNFVV CD+CQRT NM H DEMPQQPILEIELF+VWGIDFM  FPQSG ++YILL ++YV K  EAISC KND I +  F K
Subjt:  AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSK

Query:  EHL
         ++
Subjt:  EHL

A0A5D3DCJ0 Integrase, catalytic core1.6e-3467.27Show/hide
Query:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS
        M AKVLQ+GYFWPTLF+D+RNF+V CDR QRT NM H +EM Q+PILEIELFNVWGIDFM  FPQS  ++YILL VDYV K VEAIS  KNDVIT+  F 
Subjt:  MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFS

Query:  KEHLLEFWDT
        K ++   + T
Subjt:  KEHLLEFWDT

SwissProt top hitse value%identityAlignment
P92516 Uncharacterized mitochondrial protein AtMg007503.5e-1559.65Show/hide
Query:  VLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR
        VLQ+G++WPT FKD   FV +CD CQR GN    +EMPQ  ILE+E+F+VWGI FM+
Subjt:  VLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR

Arabidopsis top hitse value%identityAlignment
ATMG00750.1 GAG/POL/ENV polyprotein2.5e-1659.65Show/hide
Query:  VLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR
        VLQ+G++WPT FKD   FV +CD CQR GN    +EMPQ  ILE+E+F+VWGI FM+
Subjt:  VLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAAAGGTCTTGCAGAGTGGATACTTCTGGCCTACTCTATTTAAGGATTTAAGGAACTTTGTGGTCAACTGTGATAGGTGCCAAAGAACAGGAAACATGTTTCA
TCTCGATGAAATGCCTCAACAGCCCATCCTGGAGATTGAACTCTTTAATGTGTGGGGAATTGACTTTATGAGACTGTTTCCTCAATCTGGTGAATACTTATACATCTTGT
TGGATGTGGACTATGTCTTGAAGTGCGTTGAAGCTATCTCTTGTACGAAGAACGATGTGATTACAATCAGAAATTTTTCAAAAGAACATCTTCTCGAATTTTGGGACACA
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAAAGGTCTTGCAGAGTGGATACTTCTGGCCTACTCTATTTAAGGATTTAAGGAACTTTGTGGTCAACTGTGATAGGTGCCAAAGAACAGGAAACATGTTTCA
TCTCGATGAAATGCCTCAACAGCCCATCCTGGAGATTGAACTCTTTAATGTGTGGGGAATTGACTTTATGAGACTGTTTCCTCAATCTGGTGAATACTTATACATCTTGT
TGGATGTGGACTATGTCTTGAAGTGCGTTGAAGCTATCTCTTGTACGAAGAACGATGTGATTACAATCAGAAATTTTTCAAAAGAACATCTTCTCGAATTTTGGGACACA
TAG
Protein sequenceShow/hide protein sequence
MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT