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IVF0019784 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019784
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr03:10258364..10258727
RNA-Seq ExpressionIVF0019784
SyntenyIVF0019784
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038356.1 pol [Cucumis melo var. makuwa]3.83e-3157.26Show/hide
Query:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFD
        M KL VKYNI HK A           + SN +IKKILEK+VNSSCKDW DHLDSTLW YR  YK P+ +SPYALVF   CHL L+          KLNF+
Subjt:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFD

Query:  NQVAEKAMLLQLHELQE
          VA +AMLLQL+E QE
Subjt:  NQVAEKAMLLQLHELQE

KAA0040818.1 Pol polyprotein [Cucumis melo var. makuwa]1.74e-3055Show/hide
Query:  MDKLLVKYNINHKFAKA-----------SNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFD
        M KLLVKYNINH+ A A           SNRE+KKILEK+V    KDW DHL STLW YR  YK P+EMS YAL F  AC+L ++          KLNFD
Subjt:  MDKLLVKYNINHKFAKA-----------SNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFD

Query:  NQVAEKAMLLQLHELQEWCS
        N   E+A LLQLHE Q+W S
Subjt:  NQVAEKAMLLQLHELQEWCS

TYJ97037.1 pol [Cucumis melo var. makuwa]4.63e-3057.26Show/hide
Query:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFD
        M KL VKYNI HK A           + SN +IKKILEK+VNSSCKDW DHLDSTLW YR  YK P+ +SPYALVF   CHL L+          KLNF+
Subjt:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFD

Query:  NQVAEKAMLLQLHELQE
          VA +AMLLQL+E QE
Subjt:  NQVAEKAMLLQLHELQE

TYK25722.1 uncharacterized protein E5676_scaffold862G00140 [Cucumis melo var. makuwa]1.47e-2858.82Show/hide
Query:  YNINHKFAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEW
        Y +N+  A+ SNREIKKILEK+VNSS KDW DHLDS LW Y   YK P+ MSPY LVF  ACHL LE          KLNFD+    +A LLQ +ELQEW
Subjt:  YNINHKFAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEW

Query:  CS
         S
Subjt:  CS

XP_008464670.1 PREDICTED: uncharacterized protein LOC103502497 [Cucumis melo]2.58e-2862.5Show/hide
Query:  FAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEWCS
        + + SNR+IKKILEK+VNSS KD  DHLDST WAY I YK PI MSPY LVFK A HL LE          KLNFD+  A +A LL+L+ELQEWCS
Subjt:  FAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEWCS

TrEMBL top hitse value%identityAlignment
A0A1S3CM09 uncharacterized protein LOC1035024972.1e-2262.5Show/hide
Query:  FAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEWCS
        + + SNR+IKKILEK+VNSS KD  DHLDST WAY I YK PI MSPY LVFK A HL LE          KLNFD+  A +A LL+L+ELQEWCS
Subjt:  FAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEWCS

A0A5A7T814 Pol7.7e-2557.26Show/hide
Query:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSL----------EKLNFD
        M KL VKYNI HK A           + SN +IKKILEK+VNSSCKDW DHLDSTLW YR  YK P+ +SPYALVF   CHL L          +KLNF+
Subjt:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSL----------EKLNFD

Query:  NQVAEKAMLLQLHELQE
          VA +AMLLQL+E QE
Subjt:  NQVAEKAMLLQLHELQE

A0A5A7TD06 Pol polyprotein7.2e-2355Show/hide
Query:  MDKLLVKYNINHKFAKA-----------SNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSL----------EKLNFD
        M KLLVKYNINH+ A A           SNRE+KKILEK+V    KDW DHL STLW YR  YK P+EMS YAL F  AC+L +          +KLNFD
Subjt:  MDKLLVKYNINHKFAKA-----------SNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSL----------EKLNFD

Query:  NQVAEKAMLLQLHELQEWCS
        N   E+A LLQLHE Q+W S
Subjt:  NQVAEKAMLLQLHELQEWCS

A0A5A7UE09 Rve domain-containing protein2.1e-2262.5Show/hide
Query:  FAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEWCS
        + + SNR+IKKILEK+VNSS KD  DHLDST WAY I YK PI MSPY LVFK A HL LE          KLNFD+  A +A LL+L+ELQEWCS
Subjt:  FAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLE----------KLNFDNQVAEKAMLLQLHELQEWCS

A0A5D3BD35 Pol7.7e-2557.26Show/hide
Query:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSL----------EKLNFD
        M KL VKYNI HK A           + SN +IKKILEK+VNSSCKDW DHLDSTLW YR  YK P+ +SPYALVF   CHL L          +KLNF+
Subjt:  MDKLLVKYNINHKFA-----------KASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSL----------EKLNFD

Query:  NQVAEKAMLLQLHELQE
          VA +AMLLQL+E QE
Subjt:  NQVAEKAMLLQLHELQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAACTGCTCGTGAAGTACAACATTAACCATAAATTTGCGAAGGCCTCCAATAGAGAAATCAAGAAGATATTAGAAAAATTGGTTAATTCATCCTGCAAGGACTG
GGATGATCACCTAGACTCAACATTATGGGCTTATCGCATCGTGTACAAGATGCCTATTGAAATGTCTCCCTACGCGTTAGTCTTCAAGAACGCTTGCCATTTATCACTAG
AAAAGTTAAACTTTGACAATCAAGTTGCAGAAAAAGCAATGTTACTGCAACTACATGAACTTCAAGAGTGGTGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAACTGCTCGTGAAGTACAACATTAACCATAAATTTGCGAAGGCCTCCAATAGAGAAATCAAGAAGATATTAGAAAAATTGGTTAATTCATCCTGCAAGGACTG
GGATGATCACCTAGACTCAACATTATGGGCTTATCGCATCGTGTACAAGATGCCTATTGAAATGTCTCCCTACGCGTTAGTCTTCAAGAACGCTTGCCATTTATCACTAG
AAAAGTTAAACTTTGACAATCAAGTTGCAGAAAAAGCAATGTTACTGCAACTACATGAACTTCAAGAGTGGTGTTCTTAA
Protein sequenceShow/hide protein sequence
MDKLLVKYNINHKFAKASNREIKKILEKLVNSSCKDWDDHLDSTLWAYRIVYKMPIEMSPYALVFKNACHLSLEKLNFDNQVAEKAMLLQLHELQEWCS