; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0019835 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019835
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr06:8131196..8131516
RNA-Seq ExpressionIVF0019835
SyntenyIVF0019835
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059489.1 ribosomal protein L5 [Cucumis melo var. makuwa]7.89e-3064.13Show/hide
Query:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSSVSETT
        M +TQF  P  KSG  T SSLCSV VISLSIF A    TS HTP +L  TFS+GI RE SSLEG+LWCNPK SKRWPMLPT+ + +  S TT
Subjt:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSSVSETT

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]3.45e-2565.52Show/hide
Query:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS
        M +TQF R  AK  P  F    +VLVISLSIFEA T RTSTHT  +L   F++GI REASSLEGELW +PKR KRWPML TSGER S
Subjt:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]7.59e-3476.67Show/hide
Query:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS
        RARM ++QF R GAKS   T SSLC VLVI+LSIFEA TPRTSTHT  +L D FSRGI +EASSLEGELWCNPKRSKRW MLPTS ERSS
Subjt:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]3.30e-3375.31Show/hide
Query:  FRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS
        F    KSGP T SS+CSVLVI LSIF A  PRTSTHTP +L D FS GIDREA SLEGELWC+PKRS+RWPMLPTSG+RSS
Subjt:  FRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]9.36e-2745.18Show/hide
Query:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSR--------------------------------------------
        RARM QTQF RPG KS P T S+LCSVLV SLSIF A TPRTSTHTP +L DTFS                                             
Subjt:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSR--------------------------------------------

Query:  ----------GIDREASSLEGELWCNPKRSKRWPMLPTSGERSS-------VSETTGNSLAAKETG
                  GI REASSLEGEL C+PK SKRWPMLPT GERSS        + + GN L+++ +G
Subjt:  ----------GIDREASSLEGELWCNPKRSKRWPMLPTSGERSS-------VSETTGNSLAAKETG

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)3.8e-2264.13Show/hide
Query:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSSVSETT
        M +TQF  P  KSG  T SSLCSV VISLSIF A    TS HTP +L  TFS+GI RE SSLEG+LWCNPK SKRWPMLPT+ + +  S TT
Subjt:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSSVSETT

A0A5A7V368 Uncharacterized protein4.0e-1965.52Show/hide
Query:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS
        M +TQF R  AK  P  F    +VLVISLSIFEA T RTSTHT  +L   F++GI REASSLEGELW +PKR KRWPML TSGER S
Subjt:  MSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein8.0e-2876.67Show/hide
Query:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS
        RARM ++QF R GAKS   T SSLC VLVI+LSIFEA TPRTSTHT  +L D FSRGI +EASSLEGELWCNPKRSKRW MLPTS ERSS
Subjt:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS

A0A5D3CZ27 ULP_PROTEASE domain-containing protein4.8e-2575.31Show/hide
Query:  FRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS
        F    KSGP T SS+CSVLVI LSIF A  PRTSTHTP +L D FS GIDREA SLEGELWC+PKRS+RWPMLPTSG+RSS
Subjt:  FRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSS

A0A5D3DFP2 Uncharacterized protein2.5e-2145.18Show/hide
Query:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSR--------------------------------------------
        RARM QTQF RPG KS P T S+LCSVLV SLSIF A TPRTSTHTP +L DTFS                                             
Subjt:  RARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSR--------------------------------------------

Query:  ----------GIDREASSLEGELWCNPKRSKRWPMLPTSGERSS-------VSETTGNSLAAKETG
                  GI REASSLEGEL C+PK SKRWPMLPT GERSS        + + GN L+++ +G
Subjt:  ----------GIDREASSLEGELWCNPKRSKRWPMLPTSGERSS-------VSETTGNSLAAKETG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCCAGAATGTCCCAGACTCAGTTTTTTCGTCCTGGGGCAAAAAGCGGTCCCTCGACATTTTCTTCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGA
GGCTCATACTCCGAGGACTTCAACCCACACTCCTAGCATACTCTTTGACACGTTTTCTAGAGGTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCAACC
CAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCGGTGTCAGAAACCACTGGAAATTCACTTGCAGCGAAGGAAACGGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCCAGAATGTCCCAGACTCAGTTTTTTCGTCCTGGGGCAAAAAGCGGTCCCTCGACATTTTCTTCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGA
GGCTCATACTCCGAGGACTTCAACCCACACTCCTAGCATACTCTTTGACACGTTTTCTAGAGGTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCAACC
CAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCGGTGTCAGAAACCACTGGAAATTCACTTGCAGCGAAGGAAACGGGCTGA
Protein sequenceShow/hide protein sequence
MRARMSQTQFFRPGAKSGPSTFSSLCSVLVISLSIFEAHTPRTSTHTPSILFDTFSRGIDREASSLEGELWCNPKRSKRWPMLPTSGERSSVSETTGNSLAAKETG