; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0019839 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019839
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationchr06:21323725..21325832
RNA-Seq ExpressionIVF0019839
SyntenyIVF0019839
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]9.09e-11496.43Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]8.10e-117100Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]5.18e-10289.29Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]6.31e-10389.88Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]5.67e-10892.26Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT S+NLTPRSFNSRPPFKL+S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL  S K A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein1.2e-8696.43Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT5.8e-89100Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT5.8e-89100Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT1.0e-7789.29Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT2.1e-7889.88Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT9.0e-4760.57Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSP---LSIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    + +       + L WL P    ++ P++ S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSP---LSIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT9.0e-4760.57Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSP---LSIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    + +       + L WL P    ++ P++ S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSP---LSIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT1.2e-5465.68Show/hide
Query:  SLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L+S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein8.3e-5665.68Show/hide
Query:  SLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L+S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTCTCTTGTACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTCAAATTAGCTTCCCATTTTCTTGGTCTTCAGTCCAACCTTCG
ATGGCTCTCACCCCTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAG
ATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCA
GTGGACATTTTGTTGATGCTGGCTGCCTCAGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAGTTATGATGTGAAAGATGTAGATGGTCGAACTGC
CATTGATAGAGCACTTAACGAAGAAATTAAGGATTTTATTCTCAAATTTTCTGCTAAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
CCGGATACCGAGTGGATGGATAGAACCTCCAAGATTGCGAGAGCAAAAGCTCAGCCAAAACTTGCACAAACTCACCCATGGCTTCCCTCTCTTGTACTACCTCCATTAAT
CTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTCAAATTAGCTTCCCATTTTCTTGGTCTTCAGTCCAACCTTCGATGGCTCTCACCCCTCTCCATTGGACCCTCCAA
TGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGTATT
TTAACTACATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCAGAA
GGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAGTTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACTTAACGAAGAAATTAAGGA
TTTTATTCTCAAATTTTCTGCTAAAAAGGCATGATTTTGGTTGGAAGTTGCTCTGTTTTGATAGGTTCTAGAAAGAGGTTGTTTAAGATTTGTATTTTCACTGCTTCTGA
TGTTAATTATATTGTGTTAAATATAAGCCTGTCTTTATCAATTAGGGAATGGCTTCGAGATGTAAAATCTTGGTTATAGATGTTAGGTGTTTTGATGTTCTCGTTAACTT
TAAAATGGTGTTTAATCTTTTAAAAGCGATGGAAATTGAATTA
Protein sequenceShow/hide protein sequence
MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA