; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0019840 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0019840
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr03:15340788..15342033
RNA-Seq ExpressionIVF0019840
SyntenyIVF0019840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]5.13e-7579.04Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
        MSS+KGSARGRTNSTSSKG+RP SSSNS PSP+SA QY MDLGFT VTR  SR   IWIGSPTESSTPPRPS NLIRPS GV+QMRPPASPSSNRESSTP
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP

Query:  PTTYSQAVTPDKRFVPRPEIKSYFQKL----------EYQSLTSEETVSKIFPEDFNFLLEDLRKTR
        PTTYSQAVT DKRFVPRPEIKSYFQK           EYQSLT EE VSKIFP+DFNFL EDL+K +
Subjt:  PTTYSQAVTPDKRFVPRPEIKSYFQKL----------EYQSLTSEETVSKIFPEDFNFLLEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]4.30e-7380Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
        MSS KG+ARGRTNSTSSKGNR  SSSNSAPSP+SADQYAMDLGFT VTR  SR  GI IG PTESSTPPRPS NLIRP   VVQM+PPASPSSNR+SSTP
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP

Query:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRK
        PTTYSQAVTPDKRFVPRP+IK YFQK          LEYQSLT EE VSKIFPEDFNFL EDLRK
Subjt:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRK

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]1.23e-6543.15Show/hide
Query:  LSADQYAMDLGFTTVTRFISRSFGIWIGSPTESST-PPRPSTNLIRPSSGVVQMRPPASPSSNRESST---PPTTYSQAVTPDKRFVPRPEIKSYFQKLE
        +SA+ YAMDL F  V+R    S    +   ++SS+ PP PST L+RPS      +  ASP+++   S     P++YSQ V P K F PRP I  YF K  
Subjt:  LSADQYAMDLGFTTVTRFISRSFGIWIGSPTESST-PPRPSTNLIRPSSGVVQMRPPASPSSNRESST---PPTTYSQAVTPDKRFVPRPEIKSYFQKLE

Query:  YQSLTSE---------ETVSKIFPEDFNFLLEDLRKTRKFYEFILADTKSVEITHVPDKNDPSKIAYSKFKIFKSINPTHWNRRIFTEKSLSKSFVPQSF
           LT E         E  S+IFP  FNFL EDL KTR FYE+IL D+KS EITHVPDKNDPSKI YSK +IF+ + P++W + +F  +  S  F P S+
Subjt:  YQSLTSE---------ETVSKIFPEDFNFLLEDLRKTRKFYEFILADTKSVEITHVPDKNDPSKIAYSKFKIFKSINPTHWNRRIFTEKSLSKSFVPQSF

Query:  SYQDYIKACYNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHIKEWFTENGYLQDIDQRKNVEFLNDKSKLLVALAQATTDADIQRLLSTAV
        +Y+DY KA Y       +K L K+L+IKWWEK+N+ H  +  IK+WF  N +LQD+ ++++  FL  K+ ++  L  A+T  +   +++  V
Subjt:  SYQDYIKACYNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHIKEWFTENGYLQDIDQRKNVEFLNDKSKLLVALAQATTDADIQRLLSTAV

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.04e-9794.38Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
        MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP

Query:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK
        PTTYSQAVTPDKRFVPRPEIKSYFQK          LEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK
Subjt:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]1.10e-6377.12Show/hide
Query:  RTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTP
        R NSTSS+GNRP SSSNSAPSP+SADQYAMDLGFTTVTR  +RS  I IGSPT+SSTPPR S NLIRPSS VVQMRP ASP SNRESSTPPTTYSQ +TP
Subjt:  RTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTP

Query:  DKRFVPRPEIKSYFQKL----------EYQSLTSEETVSKIFPEDFNFLLEDL
        DKRFVPR EIKSYFQK           EYQSLT EETVSKIFP++FNFL +DL
Subjt:  DKRFVPRPEIKSYFQKL----------EYQSLTSEETVSKIFPEDFNFLLEDL

TrEMBL top hitse value%identityAlignment
A0A5A7T5B0 Polyprotein1.9e-5142.48Show/hide
Query:  LSADQYAMDLGFTTVTRFISRSFGIWIGSPTESST-PPRPSTNLIRPSSGVVQMRPPASPSSNRESST---PPTTYSQAVTPDKRFVPRPEIKSYFQKLE
        +SA+ YAMDL F  V+R    S    +   ++SS+ PP PST L+RPS      +  ASP+++   S     P++YSQ V P K F PRP I  YF K  
Subjt:  LSADQYAMDLGFTTVTRFISRSFGIWIGSPTESST-PPRPSTNLIRPSSGVVQMRPPASPSSNRESST---PPTTYSQAVTPDKRFVPRPEIKSYFQKLE

Query:  YQSLTSE---------ETVSKIFPEDFNFLLEDLRKTRKFYEFILADTKSVEITHVPDKNDPSKIAYSKFKIFKSINPTHWNRRIFTEKSLSKSFVPQSF
           LT E         E  S+IFP  FNFL EDL KTR FYE+IL D+KS EITHVPDKNDPSKI YSK +IF+ + P++W + +F  +  S  F P S+
Subjt:  YQSLTSE---------ETVSKIFPEDFNFLLEDLRKTRKFYEFILADTKSVEITHVPDKNDPSKIAYSKFKIFKSINPTHWNRRIFTEKSLSKSFVPQSF

Query:  SYQDYIKACYNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHIKEWFTENGYLQDIDQRKNVEFLNDKSKLLVALAQATTDADIQRLL-STAVNASSSSK
        +Y+DY KA Y       +K L K+L+IKWWEK+N+ H  +  IK+WF  N +LQD+ ++++  FL  K+ ++  L  A+T  +   ++ +  VN S  + 
Subjt:  SYQDYIKACYNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHIKEWFTENGYLQDIDQRKNVEFLNDKSKLLVALAQATTDADIQRLL-STAVNASSSSK

Query:  SPSSSI
          S  I
Subjt:  SPSSSI

A0A5A7TM80 Putative Retrotransposon protein3.8e-8194.38Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
        MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP

Query:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK
        PTTYSQAVTPDKRFVPRPEIKSYFQK          LEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK
Subjt:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK

A0A5D3DHH1 Uncharacterized protein5.0e-4975.46Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESST-
        MSS+KGSARGRTNSTSSKGNRP SSSNS PS +SA QYA+DLGFT VTR  SR FGIWIGS TESSTP RPS NLIRPS  V+QMR  ASPSSN ESST 
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESST-

Query:  PPTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEE-TVSKIFPEDFNFLLE
        PPTTYSQAVTPDKRFVPRPE K+YF+K          LEYQ+LT EE TVSKIFP+ FNFL E
Subjt:  PPTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEE-TVSKIFPEDFNFLLE

A0A5D3E4J4 Uncharacterized protein6.6e-5780Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
        MSS KG+ARGRTNSTSSKGNR  SSSNSAPSP+SADQYAMDLGFT VTR  SR  GI IG PTESSTPPRPS NLIRP   VVQM+PPASPSSNR+SSTP
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP

Query:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRK
        PTTYSQAVTPDKRFVPRP+IK YFQK          LEYQSLT EE VSKIFPEDFNFL EDLRK
Subjt:  PTTYSQAVTPDKRFVPRPEIKSYFQK----------LEYQSLTSEETVSKIFPEDFNFLLEDLRK

E5GCE6 Uncharacterized protein2.0e-5879.04Show/hide
Query:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP
        MSS+KGSARGRTNSTSSKG+RP SSSNS PSP+SA QY MDLGFT VTR  SR   IWIGSPTESSTPPRPS NLIRPS GV+QMRPPASPSSNRESSTP
Subjt:  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTP

Query:  PTTYSQAVTPDKRFVPRPEIKSYFQKL----------EYQSLTSEETVSKIFPEDFNFLLEDLRKTR
        PTTYSQAVT DKRFVPRPEIKSYFQK           EYQSLT EE VSKIFP+DFNFL EDL+K +
Subjt:  PTTYSQAVTPDKRFVPRPEIKSYFQKL----------EYQSLTSEETVSKIFPEDFNFLLEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTGATAAGGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGAAATCGTCCACCTTCTTCTTCTAATTCTGCACCCTCACCTTTGAGTGCAGATCA
ATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATTCATATCAAGATCGTTTGGCATATGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTCGACCA
ATCTTATCCGTCCTTCTAGCGGAGTCGTTCAAATGAGGCCTCCTGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAAGCCGTCACCCCC
GATAAACGATTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAACTCGAATATCAAAGTCTCACTTCAGAAGAGACAGTTTCAAAAATCTTTCCAGAGGACTTTAA
TTTTCTTCTTGAAGACCTCAGAAAAACAAGAAAGTTCTATGAGTTTATTTTAGCAGACACAAAGTCTGTAGAAATAACTCATGTTCCAGACAAAAACGATCCTTCAAAAA
TTGCTTATTCAAAATTTAAAATTTTTAAATCAATCAATCCAACTCATTGGAATCGAAGAATTTTTACAGAAAAATCCCTTTCTAAATCTTTTGTTCCTCAATCCTTCTCA
TACCAAGATTATATCAAAGCTTGCTACAACACAGCATCATATCCTCAATACAAAATGTTGGTTAAAAATCTAAAAATCAAATGGTGGGAAAAATACAATTTTCAGCATGC
TACCATCAAACACATAAAGGAATGGTTCACAGAGAACGGATATCTACAAGACATTGATCAAAGAAAGAATGTCGAGTTCTTAAACGACAAATCAAAACTCCTTGTCGCAC
TTGCACAAGCCACAACTGATGCAGATATCCAGAGATTATTATCAACAGCAGTAAATGCTTCTTCTTCTTCTAAGTCACCATCTTCTTCCATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTGATAAGGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGAAATCGTCCACCTTCTTCTTCTAATTCTGCACCCTCACCTTTGAGTGCAGATCA
ATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATTCATATCAAGATCGTTTGGCATATGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTCGACCA
ATCTTATCCGTCCTTCTAGCGGAGTCGTTCAAATGAGGCCTCCTGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAAGCCGTCACCCCC
GATAAACGATTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAACTCGAATATCAAAGTCTCACTTCAGAAGAGACAGTTTCAAAAATCTTTCCAGAGGACTTTAA
TTTTCTTCTTGAAGACCTCAGAAAAACAAGAAAGTTCTATGAGTTTATTTTAGCAGACACAAAGTCTGTAGAAATAACTCATGTTCCAGACAAAAACGATCCTTCAAAAA
TTGCTTATTCAAAATTTAAAATTTTTAAATCAATCAATCCAACTCATTGGAATCGAAGAATTTTTACAGAAAAATCCCTTTCTAAATCTTTTGTTCCTCAATCCTTCTCA
TACCAAGATTATATCAAAGCTTGCTACAACACAGCATCATATCCTCAATACAAAATGTTGGTTAAAAATCTAAAAATCAAATGGTGGGAAAAATACAATTTTCAGCATGC
TACCATCAAACACATAAAGGAATGGTTCACAGAGAACGGATATCTACAAGACATTGATCAAAGAAAGAATGTCGAGTTCTTAAACGACAAATCAAAACTCCTTGTCGCAC
TTGCACAAGCCACAACTGATGCAGATATCCAGAGATTATTATCAACAGCAGTAAATGCTTCTTCTTCTTCTAAGTCACCATCTTCTTCCATATAG
Protein sequenceShow/hide protein sequence
MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTP
DKRFVPRPEIKSYFQKLEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTKSVEITHVPDKNDPSKIAYSKFKIFKSINPTHWNRRIFTEKSLSKSFVPQSFS
YQDYIKACYNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHIKEWFTENGYLQDIDQRKNVEFLNDKSKLLVALAQATTDADIQRLLSTAVNASSSSKSPSSSI