CuGenDBv2

Gene ID	IVF0019846
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Genome location	chr06:5817505..5817792
RNA-Seq Expression	IVF0019846
Synteny	IVF0019846
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR027104 - U4/U6 small nuclear ribonucleoprotein Prp3

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033141.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

4.05e-49

96.77

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQ QKELAEKLKKI L
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL

KAA0047405.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

3.63e-51

98.94

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL+
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV

TYK14912.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

3.06e-48

96.77

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQ QKELAEKLKKI L
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL

TYK17092.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

4.26e-48

96.77

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQ QKELAEKLKKI L
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL

TYK23452.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]

7.51e-48

96.77

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQ QKELAEKLKKI L
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLQ4 Uncharacterized protein

2.2e-37

94.68

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV
        MVEPTD+PSASVPQNLLHPSHSLPIKVSSISTTNEN+GVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ QKELAEKLK+IPL+
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV

A0A1S3CF39 U4/U6 small nuclear ribonucleoprotein Prp3

2.9e-37

96.81

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV
        MVEPTDIPSASVPQNLLHPS SLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ QKELAEKLKKIPL+
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV

A0A5A7SXX5 U4/U6 small nuclear ribonucleoprotein Prp3

2.9e-37

96.81

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV
        MVEPTDIPSASVPQNLLHPS SLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ QKELAEKLKKIPL+
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV

A0A5A7U191 U4/U6 small nuclear ribonucleoprotein Prp3

2.4e-39

98.94

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL+
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV

A0A5D3D4Z0 U4/U6 small nuclear ribonucleoprotein Prp3

6.4e-37

96.77

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Query:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL
        MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQ QKELAEKLKKI L
Subjt:  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPL

SwissProt top hits

e value

%identity

Alignment

Q9C7E7 Protein RDM16

9.0e-12

64.2

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Query:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQNQKELAEKLKKIPLV
        PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ QK LA++LK +PL+
Subjt:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQNQKELAEKLKKIPLV

Arabidopsis top hits

e value

%identity

Alignment

AT1G28060.1 Pre-mRNA-splicing factor 3

6.4e-13

64.2

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Query:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQNQKELAEKLKKIPLV
        PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ QK LA++LK +PL+
Subjt:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQNQKELAEKLKKIPLV

Sequences

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CDS sequence

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ATGGTGGAACCTACCGATATACCATCGGCCAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAA
GGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAG
CTAAGAAAGCTTTACAGAATCAGAAAGAATTAGCCGAGAAGTTGAAAAAAATTCCCCTGGTAAGTTAG

mRNA sequence

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Protein sequence

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MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLVS

IVF0019846 (gene) of Melon (IVF77) v1 genome