CuGenDBv2

Gene ID	IVF0019928
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Lipoyl synthase, chloroplastic
Genome location	chr09:14331891..14332370
RNA-Seq Expression	IVF0019928
Synteny	IVF0019928
Gene Ontology terms	GO:0009107 - lipoate biosynthetic process (biological process) GO:0009249 - protein lipoylation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0016992 - lipoate synthase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0102552 - lipoyl synthase activity (acting on glycine-cleavage complex H protein (molecular function) GO:0102553 - lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) (molecular function)
InterPro domains	IPR003698 - Lipoyl synthase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAB1206775.1 Lipoyl synthase 1, chloroplastic [Morella rubra]

3.06e-44

90.36

Show/hide

Query:  VDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        VDYIVLT+VDRDD+P+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  VDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

QHO36177.1 Lipoyl synthase [Arachis hypogaea]

3.24e-44

89.29

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDD+P+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

TYK18961.1 lipoyl synthase [Cucumis melo var. makuwa]

4.67e-46

98.67

Show/hide

Query:  VDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        +DRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
Subjt:  VDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

XP_008445908.1 PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo]

6.13e-44

91.67

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

XP_038893417.1 lipoyl synthase, chloroplastic-like [Benincasa hispida]

7.21e-44

91.67

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPN0 Lipoyl synthase, chloroplastic

2.0e-35

90.48

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A1S3BDA7 Lipoyl synthase, chloroplastic

1.6e-35

91.67

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A5D3CZE8 Lipoyl synthase, chloroplastic

1.6e-35

91.67

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A6J1G009 Lipoyl synthase, chloroplastic

2.0e-35

90.48

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A6J1HVC4 Lipoyl synthase, chloroplastic

2.0e-35

90.48

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

SwissProt top hits

e value

%identity

Alignment

B8B016 Lipoyl synthase 2, chloroplastic

8.2e-34

80.72

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRA
        GVDY+VLT+VDRDD+P+GGSGHFAQTVKA+KELK GI+VECLTSDFRGDL+ V +L  SGLDVFAHNIETV+ LQRIV+DPRA
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRA

B9I666 Lipoyl synthase 1, chloroplastic

7.9e-37

85.71

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDD+P+GGSGHFAQTV+AMKELK  IMVECLTSDFRGDLK V+TLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

B9N2B0 Lipoyl synthase 2, chloroplastic

6.7e-36

84.52

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDD+ +GGSGHFAQTV+AMKELK  IMVECLTSDFRGDLK V+TLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

B9RX57 Lipoyl synthase, chloroplastic

8.8e-36

84.52

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDD+P+GGSGHF++TV+AMK+LK  IMVECLTSDFRGDL+ VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

Q8LEE8 Lipoyl synthase, chloroplastic

2.6e-35

82.14

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDDIP+GGSGHFAQTVKAMK  K  IM+ECLTSDFRGDL+ V+TLVHSGLDVFAHN+ETVK LQR+V+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

Arabidopsis top hits

e value

%identity

Alignment

AT2G20860.1 lipoic acid synthase 1

3.0e-23

60.24

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRA
        GVDY+V+T+VDRDD+P+ GSGHFA+TV+ +K LK  +++E L  DFRGD   VE +  SGLDV AHNIETV+ LQ  V+D RA
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRA

AT5G08415.1 Radical SAM superfamily protein

1.8e-36

82.14

Show/hide

Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDDIP+GGSGHFAQTVKAMK  K  IM+ECLTSDFRGDL+ V+TLVHSGLDVFAHN+ETVK LQR+V+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTCTCTTCTACTTGTTTTATTAATGGTGTGGATTACATCGTCTTAACAACTGTAGACCGTGATGATATTCCTAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAA
AGCAATGAAGGAACTTAAGCTCGGGATAATGGTTGAATGCTTAACTTCTGATTTCCGAGGTGACTTAAAGGTTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTG
CTCACAATATTGAGACTGTGAAATGGCTTCAAAGAATTGTTAAAGATCCTCGAGCTGGGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFSSTCFINGVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

IVF0019928 (gene) of Melon (IVF77) v1 genome