; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0020009 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020009
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr02:7537190..7537564
RNA-Seq ExpressionIVF0020009
SyntenyIVF0020009
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054417.1 retrotransposon protein [Cucumis melo var. makuwa]3.27e-6587.9Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        +SQDDVRASRPSRA EGRTGSSGSKRKR SQREVDV+GIHLALDQTNEQL MIA+WPAR LAN+NHVRTKFF ILREM ELTSLDR LLQR+LLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG +LMPEDE+EGFCRVLLRDMTR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

KAA0055933.1 retrotransposon protein [Cucumis melo var. makuwa]9.46e-7499.19Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        MSQDDVRASRPSR SEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RGSVLMPEDEKEGFCRVLLRDMTR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

KAA0058533.1 retrotransposon protein [Cucumis melo var. makuwa]2.23e-6587.1Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        +SQDDVRASRPSRAS GRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIA+WPARALAN++HV T+FF IL EM ELTSLDRTLLQRHLLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG VLMPEDE+EGFCRVL+RD+TR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

KAA0064312.1 retrotransposon protein [Cucumis melo var. makuwa]1.64e-6589.26Show/hide
Query:  DDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGS
        +DVRASRPS A EGRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIAKWP  AL NDNHVRT+FF ILREMLELTSLDRTLLQRHLLSRMDDLRG 
Subjt:  DDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGS

Query:  VLMPEDEKEGFCRVLLRDMTR
        VLMPEDEKE FC+VLLRDMTR
Subjt:  VLMPEDEKEGFCRVLLRDMTR

TYK29656.1 retrotransposon protein [Cucumis melo var. makuwa]1.30e-6486.29Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        +SQDDV ASRPSRASEGRT SSGSKRKRGSQREVDV+GIHLALDQTN QL MIA+WPA AL NDNHVRT+FF ILREM ELTSLDR LLQRHLLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG VLMPEDE++GFCRVLLRD+TR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

TrEMBL top hitse value%identityAlignment
A0A5A7UIL3 Retrotransposon protein6.0e-5187.9Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        +SQDDVRASRPSRA EGRTGSSGSKRKR SQREVDV+GIHLALDQTNEQL MIA+WPAR LAN+NHVRTKFF ILREM ELTSLDR LLQR+LLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG +LMPEDE+EGFCRVLLRDMTR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

A0A5A7UJ27 Retrotransposon protein7.1e-6099.19Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        MSQDDVRASRPSR SEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RGSVLMPEDEKEGFCRVLLRDMTR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

A0A5A7ULC5 Retrotransposon protein6.0e-5184.68Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        M Q+DVRASRPSRASEGRT S+GSKRKRGSQREVDV+GIHL L+QTNEQL MI +WPARAL NDNHVRTKFFC+LRE  ELTSLDRTLLQRH+LSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG ++MPEDE+EGFCRVLLRDMTR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

A0A5A7URP3 Retrotransposon protein1.0e-5087.1Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        +SQDDVRASRPSRAS GRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIA+WPARALAN++HV T+FF IL EM ELTSLDRTLLQRHLLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG VLMPEDE+EGFCRVL+RD+TR
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

A0A5A7VJG4 Retrotransposon protein1.0e-5085.48Show/hide
Query:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL
        +SQDDVRASRPSRASEGRTGSSGSKRKRGSQR+ +++ IHLALDQTNEQL  IA+WPAR LANDNHVRTKFFCILREM ELT+LDR LLQRHLLSRMDDL
Subjt:  MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDL

Query:  RGSVLMPEDEKEGFCRVLLRDMTR
        RG VLMPEDE+EGFCRVLLRD+ R
Subjt:  RGSVLMPEDEKEGFCRVLLRDMTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAA
AGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCA
TATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAG
AAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAA
AGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCA
TATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAG
AAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG
Protein sequenceShow/hide protein sequence
MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDE
KEGFCRVLLRDMTR