CuGenDBv2

Gene ID	IVF0020037
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	AD domain-containing protein
Genome location	chr10:2943383..2945316
RNA-Seq Expression	IVF0020037
Synteny	IVF0020037
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0030198 - extracellular matrix organization (biological process) GO:0030574 - collagen catabolic process (biological process) GO:0031012 - extracellular matrix (cellular component) GO:0004222 - metalloendopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR019181 - Anticodon-binding domain IPR039683 - Protein Lsm12-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034336.1 protein LSM12-like protein A [Cucumis melo var. makuwa]

2.28e-114

83.1

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                    EGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGGQ
        ELERKRLQVRGGQ
Subjt:  ELERKRLQVRGGQ

TYK15583.1 protein LSM12-like protein A [Cucumis melo var. makuwa]

1.08e-112

82.94

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                    EGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRG
        ELERKRLQVRG
Subjt:  ELERKRLQVRG

XP_004135229.1 protein LSM12 homolog A [Cucumis sativus]

7.53e-114

83.02

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Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                 QEGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGG
        E ERKRLQVRGG
Subjt:  ELERKRLQVRGG

XP_008447009.1 PREDICTED: protein LSM12 homolog A [Cucumis melo]

1.12e-115

84.51

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL   +   F               ++F       ++QEGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGGQ
        ELERKRLQVRGGQ
Subjt:  ELERKRLQVRGGQ

XP_038892233.1 protein LSM12 homolog A-like [Benincasa hispida]

7.53e-114

83.41

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Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                 QEGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRG
        ELERKRLQVRG
Subjt:  ELERKRLQVRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQA9 AD domain-containing protein

1.8e-87

83.02

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                                 QEGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGG
        E ERKRLQVRGG
Subjt:  ELERKRLQVRGG

A0A1S3BGE7 protein LSM12 homolog A

8.1e-88

85.45

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL   +   F   +  F    N L           ++QEGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGGQ
        ELERKRLQVRGGQ
Subjt:  ELERKRLQVRGGQ

A0A5A7SWT7 Protein LSM12-like protein A

6.2e-88

83.1

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Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                    EGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGGQ
        ELERKRLQVRGGQ
Subjt:  ELERKRLQVRGGQ

A0A5D3CUL6 Protein LSM12-like protein A

8.9e-87

82.94

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                                    EGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRG
        ELERKRLQVRG
Subjt:  ELERKRLQVRG

A0A6J1GZX6 protein LSM12 homolog A

6.4e-85

82.08

Show/hide

Query:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF
        MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVL                                 QEGSKPGPRRNIRLLKANYIKEF
Subjt:  MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEF

Query:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL
        SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVL
Subjt:  SFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVL

Query:  ELERKRLQVRGG
        ELERKRLQVRGG
Subjt:  ELERKRLQVRGG

SwissProt top hits

e value

%identity

Alignment

Q0VCF9 Protein LSM12 homolog

7.2e-09

27.18

Show/hide

Query:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGE
        G+ FSVGS  S +T      QG+V+ FD  S +L L   S                                 KP    +I L+   Y+ E   +    E
Subjt:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGE

Query:  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE
         P  L +  +     +AR E   + ++A A  I  GV+ E Q +F  + KT+   +W +  IVVM EV +  PY  ++  G   +A   V+K++E
Subjt:  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE

Q3MHD2 Protein LSM12 homolog

7.2e-09

27.18

Show/hide

Query:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGE
        G+ FSVGS  S +T      QG+V+ FD  S +L L   S                                 KP    +I L+   Y+ E   +    E
Subjt:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGE

Query:  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE
         P  L +  +     +AR E   + ++A A  I  GV+ E Q +F  + KT+   +W +  IVVM EV +  PY  ++  G   +A   V+K++E
Subjt:  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE

Q5ZML5 Protein LSM12 homolog

7.2e-09

26.67

Show/hide

Query:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGE
        G+ FSVGS  S +T      QG+V+ FD PS +L L   S                                 KP    +I L+   Y+ E   +    E
Subjt:  GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGE

Query:  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE
         P  L +  L+++ L  +  +   +  ++A  I  GV+ E Q +F  + KT+   +W +  IVVM EV +  PY  ++  G   +A   V+K++E
Subjt:  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE

Q6NSN1 Protein LSM12 homolog B

1.3e-10

27.41

Show/hide

Query:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFL-GH
        G G+ FSVGS  S  T LG   QG+V+ FD PS +L L                                     KP    ++ L+   Y+ E   +   
Subjt:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFL-GH

Query:  GEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE
         E P  L +   +    RAR E   + + A A  +  GV+ E Q +F  + KT+   +W +  I+VM++V ++ PY  D+  G   +A   V+K++E
Subjt:  GEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE

Q6PBA2 Protein LSM12 homolog A

7.7e-11

27.41

Show/hide

Query:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-H
        G G+ FSVGS  S  T LG   QG+V+ FD PS +L L   S                                 KP    ++ L+   Y+ E   +   
Subjt:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-H

Query:  GEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE
         E P  L +  +     RAR E   + ++A A  I  GV+ E Q +F  + KT+   +W +  I+VM++V ++ PY  ++  G   +A   ++K++E
Subjt:  GEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLE

Arabidopsis top hits

e value

%identity

Alignment

AT1G24050.1 RNA-processing, Lsm domain

2.8e-48

52.17

Show/hide

Query:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGP--RRNIRLLKANYIKEFSFLG
        G G+ F+VG+ +S+K   GDEF+G V+ +D   N                F+FF                 +EG+KP P   +N R++ A++I   S+LG
Subjt:  GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGP--RRNIRLLKANYIKEFSFLG

Query:  HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELER
          EDPLD  N  +DLN LRA+E LAIRQAEA+AER+GVGVT+EAQSIFDALSKTLPV+W+ + I+VM EVRV SPYL D V GGT AAN RVKKVLELER
Subjt:  HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELER

Query:  KRLQVRG
        +RLQ+ G
Subjt:  KRLQVRG

AT1G70220.1 RNA-processing, Lsm domain

1.2e-30

40.37

Show/hide

Query:  LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SPFL-IFLFVFLFFLNSLTVSFFCCYFCD---LIQEGSKPGP--RRNIRL
        +D  G  + F VG  +++K T GD+F G V+ +D   N  V  IL     S  +  +L  F F ++S  V F    F D   ++QEG+KP P   +++R+
Subjt:  LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SPFL-IFLFVFLFFLNSLTVSFFCCYFCD---LIQEGSKPGP--RRNIRL

Query:  LKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPA
        +  NYI E   LG  ++ L  KN  ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + SPY  D V GG   
Subjt:  LKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPA

Query:  ANERVKKVLELERKRLQV
         NERVK VL  ERK+LQ+
Subjt:  ANERVKKVLELERKRLQV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCG
CCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTT
GTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTT
GATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGA
GGCTCAAAGTATTTTTGATGCCCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACT
CTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGA

mRNA sequence

Show/hide mRNA sequence

GAAAAGGTAAAGCCCTAATTTATATGGGGATTAGGTAATTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGAGAAAAT
GGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCC
CCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGT
GATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGA
TCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGG
CTCAAAGTATTTTTGATGCCCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCT
GTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGATGGTTATTCATCCCTATCCT
TCTTTTCTGGGTGACAAGCTAATTGAGCTAAGGTATAACCCCGGCATCTCAGTGTCAGCAATCCCAAGGAATTTGGTGTTTGAGTGGTAACCTAGTTGAATTTTGGTGTT
TGAGTGGTAACCTAGTTGAATTTAGTGTTGCCAAAGTTTTTTTTGTTTATTAGTTTATGTAGTTGATTTTCTCCCGTTTATGGACTGCACTGCATTGGACAAACTTTTTG
GGTCCATATTTAAAGTTTCCCAGATTTGCTCTATTGCAAGTATGAAACCTGAACAAATTCAAATGTAATAACTGTCCTTATTTCATTTGGTCCTGATGTATTTGGAAAAT
TAAGTTTTGAAATAATTGACTCAACCATCTAATGACCTAACATTGATATTGTTTGGGGCATAAGATTGCTCTTATAGTTGTTATTTGCCATGTCTTTCAATCTGGAGTTT
GTGAAATTACATTTTGACATTCTGGGCATCTTTGAGAAAGGTCATGGGC

Protein sequence

Show/hide protein sequence

MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPL
DLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGGQ

IVF0020037 (gene) of Melon (IVF77) v1 genome