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IVF0020068 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020068
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr12:12371372..12371689
RNA-Seq ExpressionIVF0020068
SyntenyIVF0020068
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008445 - D-aspartate oxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KIO93805.1 hypothetical protein QP38_2413 [Levilactobacillus brevis]2.36e-3566.28Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        DKAK+D I+K+ YPT +K +RSFLG  GFYRRFIKDFSKI  PLTNLLQKD+PF+ DD+C++AF+ LK+ L++ PI+Q P+WNLPF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

MCH92231.1 hypothetical protein [Trifolium medium]5.37e-3567.44Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D AKIDVI  L +PTC++++RSFLG  GFYRRFIKDFSKIALPL+NLLQKD+ F  DD CK+AFD LK+ L STP++Q P+W  PF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

RXY50481.1 hypothetical protein DD573_29565 [Klebsiella pneumoniae]2.21e-3565.12Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D AKIDVI +  YP+C+++VRSFLG VGFYRRFIKDFSK+ALPL+NLLQK+V F  DD CK+ FD LK  + +TPI+Q+P+W  PF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

WP_042516810.1 reverse transcriptase, partial [Levilactobacillus brevis]3.85e-3566.28Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        DKAK+D I+K+ YPT +K +RSFLG  GFYRRFIKDFSKI  PLTNLLQKD+PF+ DD+C++AF+ LK+ L++ PI+Q P+WNLPF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

WP_206737762.1 hypothetical protein, partial [Klebsiella pneumoniae]3.07e-3565.12Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D AKIDVI +  YP+C+++VRSFLG VGFYRRFIKDFSK+ALPL+NLLQK+V F  DD CK+ FD LK  + +TPI+Q+P+W  PF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

TrEMBL top hitse value%identityAlignment
A0A151QZW2 Transposon Ty3-G Gag-Pol polyprotein (Fragment)1.3e-2663.95Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D AK+ VI +L YP+C+++VRSFLG  GFYRRF+K+FSK ALPL+NLLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

A0A1R3HLK0 Retrotransposon gag protein2.0e-2766.28Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        DKAK+DV+Q L YPTC+KD+RSFLG VGFYRRFIKDFSKI+ P+  LLQKD+ F   D+CK+AFD LK  L +TPI++ P+W LPF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)7.5e-2768.6Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D AKI+V   L YP+C+ ++RSFLG  GFY RFIKDFSKIALPL+NLLQKDV F  DD CKKAFD LK  L STPI+Q PNW  PF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

A0A2U1NRI2 Reverse transcriptase1.2e-2769.77Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        DKAK+DVI KL  PT +K +RSFLG  GFYRRFIKDFSKIA PLT LL+KD+PF  DD C+KAF+ LK++L  TPI+ SPNWNLPF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

A0A392MXJ5 Uncharacterized protein (Fragment)1.2e-2767.44Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D AKIDVI  L +PTC++++RSFLG  GFYRRFIKDFSKIALPL+NLLQKD+ F  DD CK+AFD LK+ L STP++Q P+W  PF
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein1.9e-1139.29Show/hide
Query:  AKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        A+   + K+  PT  + VR FLGT GF R +I  F+ +A PL  L ++ +PF+  +  +KAFD +K+ L+S P L  P+   PF
Subjt:  AKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

P10394 Retrovirus-related Pol polyprotein from transposon 4121.5e-1139.53Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        D  K DVIQ    P      R F+    +YRRFIK+F+  +  +T L +K+VPF   D C+KAF  LK +L++  +LQ P+++  F
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

P21414 Gag-Pol polyprotein3.2e-1138.1Show/hide
Query:  AKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        A+   + K+  PT  + VR FLGT GF R +I  F+ +A PL  L ++ +PF+  +  ++AFD +K+ L+S P L  P+   PF
Subjt:  AKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

P92523 Uncharacterized mitochondrial protein AtMg008606.1e-1038.2Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        VS D AK++ +     P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+      +    AF  LK  + + P+L  P+  LPF
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.9e-1235Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        +  D  K+  I ++  PT +K+++ FLG   +YR+FI+D++K+A PLTNL +             VP  +D+   ++F+DLK  L S+ IL  P +  PF
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.4e-1138.2Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
        VS D AK++ +     P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+      +    AF  LK  + + P+L  P+  LPF
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCTCATGATAAAGCAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTACTGTCGGCTTTTATAGACGGTT
TATAAAAGATTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAA
GGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCTCATGATAAAGCAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTACTGTCGGCTTTTATAGACGGTT
TATAAAAGATTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAA
GGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCTAA
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF