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IVF0020133 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020133
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionWD repeat-containing protein RUP2-like
Genome locationchr12:9384341..9384667
RNA-Seq ExpressionIVF0020133
SyntenyIVF0020133
Gene Ontology termsGO:0010224 - response to UV-B (biological process)
GO:0005515 - protein binding (molecular function)
GO:0016874 - ligase activity (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR044616 - WD repeat-containing protein RUP1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035439.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]1.02e-7196.26Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVF
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF

Query:  VGHKKRF
        VGHKK F
Subjt:  VGHKKRF

KAA0038490.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]1.71e-7198.15Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF

Query:  VGHKKRFF
        VGHKKR F
Subjt:  VGHKKRFF

KAA0056674.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]1.31e-5997.75Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLV
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTL+
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLV

TYK31084.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]2.28e-7699.07Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF

Query:  VGHKKRFF
        VGHKKRFF
Subjt:  VGHKKRFF

XP_004148378.3 LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus]1.33e-6790.52Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGG--------MGSGYGLVSSVCWRQVGEQECTLVAGG
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGG        MGSGYGLVSSVCWRQVGEQECTLVAGG
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGG--------MGSGYGLVSSVCWRQVGEQECTLVAGG

Query:  SDGVLQVFVGHKKRFF
        SDGVLQVFVGHKKR F
Subjt:  SDGVLQVFVGHKKRFF

TrEMBL top hitse value%identityAlignment
A0A0A0LHK2 Ubiquitin ligase protein cop11.0e-5490.52Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG--------GMGSGYGLVSSVCWRQVGEQECTLVAGG
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG        GMGSGYGLVSSVCWRQVGEQECTLVAGG
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG--------GMGSGYGLVSSVCWRQVGEQECTLVAGG

Query:  SDGVLQVFVGHKKRFF
        SDGVLQVFVGHKKR F
Subjt:  SDGVLQVFVGHKKRFF

A0A5A7T240 WD repeat-containing protein RUP2-like5.4e-5696.26Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVF
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF

Query:  VGHKKRF
        VGHKK F
Subjt:  VGHKKRF

A0A5A7T553 WD repeat-containing protein RUP2-like2.2e-5798.15Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF

Query:  VGHKKRFF
        VGHKKR F
Subjt:  VGHKKRFF

A0A5D3E556 WD repeat-containing protein RUP2-like2.6e-5899.07Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
        MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVF

Query:  VGHKKRFF
        VGHKKRFF
Subjt:  VGHKKRFF

A0A6J1GKZ5 WD repeat-containing protein RUP2-like1.2e-4784.82Show/hide
Query:  MWKTEE----GGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGV
        MWK EE    GGGARVVRT EGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGE +WV+EFD  +GSGYGLVSSVCWRQVGE ECTLVAGGSDGV
Subjt:  MWKTEE----GGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGV

Query:  LQVFVGHKKRFF
        L+VFVG KKR F
Subjt:  LQVFVGHKKRFF

SwissProt top hitse value%identityAlignment
P43254 E3 ubiquitin-protein ligase COP12.6e-0733.68Show/hide
Query:  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV
        VRT  GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D    +G   +S+VCW+       T++   S G ++V V
Subjt:  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV

P93471 E3 ubiquitin-protein ligase COP14.0e-0835.79Show/hide
Query:  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV
        VRT  GH N ++FVGL+V  +   I CGSE   VFVY K   +P+    F      D    +G   +S+VCW+       T++   S G ++V V
Subjt:  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV

Q9FFA7 WD repeat-containing protein RUP27.8e-3665.74Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVL
        +W  E+G   RV+RT EGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV  F+  GM SG     VSSVCWRQ G  +CTLVAGGSDGVL
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVL

Query:  QVFVGHKK
        QV+VG +K
Subjt:  QVFVGHKK

Q9LJR3 Protein SPA1-RELATED 31.7e-0637.08Show/hide
Query:  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV
        GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         +      +SS+CWR    Q  TLVA  S+G +++
Subjt:  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV

Q9LTJ6 WD repeat-containing protein RUP11.3e-2763.54Show/hide
Query:  GARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG
        G RVVRT  GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         GS    VSSVC RQV E  CTLVAGGSDG L++F G
Subjt:  GARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG

Arabidopsis top hitse value%identityAlignment
AT1G53090.1 SPA1-related 41.6e-0738.2Show/hide
Query:  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF-------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV
        GH N ++FVGLSV    G I  GSE   VFVY K +  P+   +F       +  +      +SSVCWR    Q  TLVA  S G +++
Subjt:  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF-------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV

AT2G32950.1 Transducin/WD40 repeat-like superfamily protein1.9e-0833.68Show/hide
Query:  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV
        VRT  GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D    +G   +S+VCW+       T++   S G ++V V
Subjt:  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV

AT3G15354.1 SPA1-related 31.2e-0737.08Show/hide
Query:  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV
        GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         +      +SS+CWR    Q  TLVA  S+G +++
Subjt:  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV

AT5G23730.1 Transducin/WD40 repeat-like superfamily protein5.5e-3765.74Show/hide
Query:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVL
        +W  E+G   RV+RT EGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV  F+  GM SG     VSSVCWRQ G  +CTLVAGGSDGVL
Subjt:  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVL

Query:  QVFVGHKK
        QV+VG +K
Subjt:  QVFVGHKK

AT5G52250.1 Transducin/WD40 repeat-like superfamily protein9.5e-2963.54Show/hide
Query:  GARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG
        G RVVRT  GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         GS    VSSVC RQV E  CTLVAGGSDG L++F G
Subjt:  GARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTGCGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAAT
CGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCA
GTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTGCGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAAT
CGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCA
GTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGA
Protein sequenceShow/hide protein sequence
MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF