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IVF0020162 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020162
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr08:6262845..6263246
RNA-Seq ExpressionIVF0020162
SyntenyIVF0020162
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025621.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.86e-24100Show/hide
Query:  AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
        AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
Subjt:  AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
KGN48977.1 hypothetical protein Csa_003732 [Cucumis sativus]1.41e-1968.25Show/hide
Query:  NGYNEITNIFEK---AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
        NG    + I  K   AMDFHFIQIHAP+GE  C V L  ALHMFDKTPD TSS VSLMASLKD
Subjt:  NGYNEITNIFEK---AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
TrEMBL top hitse value%identityAlignment
A0A0A0KKX0 Uncharacterized protein1.7e-1281.25Show/hide
Query:  AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
        AMDFHFIQIHAP+GE  C V L  ALHMFDKTPD TSS VSLMASLKD
Subjt:  AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
A0A5A7SN01 Pentatricopeptide repeat-containing protein4.1e-19100Show/hide
Query:  AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
        AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
Subjt:  AMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGGAAGAACAACGGATATAATGAAATAACTAATATATTTGAGAAAGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGGTGATTGCTGTGT
TGTTTTGTTCAGTGCCCTTCACATGTTCGACAAAACGCCTGACTTAACCTCTTCTCGTGTCTCCCTCATGGCGTCTCTTAAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATGGAAGAACAACGGATATAATGAAATAACTAATATATTTGAGAAAGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGGTGATTGCTGTGT
TGTTTTGTTCAGTGCCCTTCACATGTTCGACAAAACGCCTGACTTAACCTCTTCTCGTGTCTCCCTCATGGCGTCTCTTAAGGACTAG
Protein sequenceShow/hide protein sequence
MKWKNNGYNEITNIFEKAMDFHFIQIHAPYGEGDCCVVLFSALHMFDKTPDLTSSRVSLMASLKD