CuGenDBv2

Gene ID	IVF0020166
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	chr07:4104285..4104509
RNA-Seq Expression	IVF0020166
Synteny	IVF0020166
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0008289 - lipid binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR005953 - ATP synthase, F0 complex, subunit C, bacterial/chloroplast IPR020537 - ATP synthase, F0 complex, subunit C, DCCD-binding site IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7075394.1 hypothetical protein CFC21_080174 [Triticum aestivum]

6.32e-35

91.89

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLI+AASVIAAGLA+GLASIGPG+GQGTAAGQAVEGI RQPEAEGKI+GTLFLSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

KAG1327691.1 ATP synthase subunit c, chloroplastic [Cocos nucifera]

4.44e-35

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPG+GQGTAAGQAVEGI RQPEAEGKIQGTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

QWW93015.1 ATP synthase CF0 subunit III [Cyathodium smaragdinum]

1.28e-34

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

YP_009668295.1 ATP synthase CF0 subunit III [Scapania ciliata]

1.28e-34

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

YP_009925616.1 ATP synthase CF0 subunit III [Phlegmariurus carinatus]

1.28e-34

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

TrEMBL top hits

e value

%identity

Alignment

A0A0U2SNX2 ATP synthase subunit c, chloroplastic

5.8e-25

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

A0A0U2UJ76 ATP synthase subunit c, chloroplastic

5.8e-25

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

A0A218KG23 ATP synthase subunit c, chloroplastic

5.8e-25

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

A0A482CGV6 ATP synthase F0 sector subunit C

5.8e-25

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

U6A3L6 ATP synthase F0 sector subunit C

5.8e-25

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

SwissProt top hits

e value

%identity

Alignment

B0Z4N0 ATP synthase subunit c, chloroplastic

1.6e-27

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

B0Z4W4 ATP synthase subunit c, chloroplastic

1.6e-27

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

P62480 ATP synthase subunit c, chloroplastic

1.6e-27

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

P62481 ATP synthase subunit c, chloroplastic

1.6e-27

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

Q6WQW2 ATP synthase subunit c, chloroplastic

1.6e-27

93.24

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPLISAASVIAAGLA+GLASIGPGIGQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.9e-28

90.54

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Query:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL
        MNPL+SAASVIAAGLA+GLASIGPG+GQGTAAGQAVEGI RQPEAEGKI+GTL LSLAFME LTIYGLVVALAL
Subjt:  MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

Sequences

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CDS sequence

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ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCGATCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCAGGCCAAGCTGTAGA
AGGGATCACGAGACAACCCGAGGCGGAGGGAAAAATCCAAGGTACTTTATTTCTTAGTCTGGCTTTTATGGAAGTTTTAACAATTTATGGACTGGTTGTAGCATTAGCAC
TTTGA

mRNA sequence

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Protein sequence

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MNPLISAASVIAAGLAIGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIQGTLFLSLAFMEVLTIYGLVVALAL

IVF0020166 (gene) of Melon (IVF77) v1 genome