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IVF0020180 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020180
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr02:10236474..10236818
RNA-Seq ExpressionIVF0020180
SyntenyIVF0020180
Gene Ontology termsNA
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038376.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.44e-1542.24Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LPL+R +DH I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS SP+SSPV
Subjt:  QAGIIQPSVSPYSSPV

KAA0045042.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]2.15e-2756.9Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVV-ANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVV---------NKNEIEKIVDDML
        M K WGE DQGFLV  R L  Y D  + HIT   ANDQ EELYAL S+  KLFVLPTELP VREVD+ + + +   V+          KNEIEK++DDML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVV-ANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVV---------NKNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
        Q G IQPS SPYS+P+
Subjt:  QAGIIQPSVSPYSSPV

KAA0056980.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.85e-1441.38Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LP +R +DH I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS SP+SSPV
Subjt:  QAGIIQPSVSPYSSPV

TYJ98541.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]4.15e-1540.52Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFLV  RA+G +    E  +T    D   E   L  +   +F +P +LP +R+++H I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS SP+SSPV
Subjt:  QAGIIQPSVSPYSSPV

TYJ99421.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.99e-1439.66Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFL+  RA+G      E  +T    D   +   L  +   +F +P ELP +R++DH I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS +P+SSPV
Subjt:  QAGIIQPSVSPYSSPV

TrEMBL top hitse value%identityAlignment
A0A5A7T836 Ty3/gypsy retrotransposon protein9.3e-1342.24Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LPL+R +DH I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS SP+SSPV
Subjt:  QAGIIQPSVSPYSSPV

A0A5A7TNU6 Pleiotropic drug resistance protein 1-like1.9e-2156.9Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHI-TVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVV---------NKNEIEKIVDDML
        M K WGE DQGFLV  R L  Y D  + HI T  ANDQ EELYAL S+  KLFVLPTELP VREVD+ + + +   V+          KNEIEK++DDML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHI-TVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVV---------NKNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
        Q G IQPS SPYS+P+
Subjt:  QAGIIQPSVSPYSSPV

A0A5A7UPE1 Ty3/gypsy retrotransposon protein6.0e-1241.38Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LP +R +DH I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS SP+SSPV
Subjt:  QAGIIQPSVSPYSSPV

A0A5D3BIM8 Pleiotropic drug resistance protein 1-like1.2e-1240.52Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFLV  RA+G +    E  +T    D   E   L  +   +F +P +LP +R+++H I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS SP+SSPV
Subjt:  QAGIIQPSVSPYSSPV

A0A5D3BL18 Ty3/gypsy retrotransposon protein1.0e-1139.66Show/hide
Query:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML
        ++KTW   DQGFL+  RA+G      E  +T    D   +   L  +   +F +P ELP +R++DH I + EG   +N          KNEIE++V+DML
Subjt:  MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVN----------KNEIEKIVDDML

Query:  QAGIIQPSVSPYSSPV
         +GII+PS +P+SSPV
Subjt:  QAGIIQPSVSPYSSPV

SwissProt top hitse value%identityAlignment
P92522 Uncharacterized mitochondrial protein AtMg008509.9e-0440.43Show/hide
Query:  LVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV
        L +E +   +++ G H++ +  ++  + +ML+A IIQPS+SPYSSPV
Subjt:  LVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein7.0e-0540.43Show/hide
Query:  LVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV
        L +E +   +++ G H++ +  ++  + +ML+A IIQPS+SPYSSPV
Subjt:  LVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAAACATGGGGAGAGACTGATCAAGGATTTTTGGTACGAGCCTTAGGGAGCTACTTTGATCTAGTGGAATTTCACATAACTGTCGTCGCAAATGACCAACTTGA
GGAATTATATGCTCTGCCAAGCAAACTTTTGAAATTGTTTGTTCTACCTACCGAATTGCCATTAGTTCGAGAAGTAGACCACTCGATTAACATTGTGGAAGGAGCACATG
TAGTGAATAAAAACGAGATTGAGAAGATAGTTGATGATATGCTACAAGCAGGAATTATACAACCAAGTGTGAGTCCTTATTCAAGCCCAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAAACATGGGGAGAGACTGATCAAGGATTTTTGGTACGAGCCTTAGGGAGCTACTTTGATCTAGTGGAATTTCACATAACTGTCGTCGCAAATGACCAACTTGA
GGAATTATATGCTCTGCCAAGCAAACTTTTGAAATTGTTTGTTCTACCTACCGAATTGCCATTAGTTCGAGAAGTAGACCACTCGATTAACATTGTGGAAGGAGCACATG
TAGTGAATAAAAACGAGATTGAGAAGATAGTTGATGATATGCTACAAGCAGGAATTATACAACCAAGTGTGAGTCCTTATTCAAGCCCAGTTTAA
Protein sequenceShow/hide protein sequence
MMKTWGETDQGFLVRALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV