CuGenDBv2

Gene ID	IVF0020234
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome location	chr05:21953474..21954019
RNA-Seq Expression	IVF0020234
Synteny	IVF0020234
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043107.1 Gag-pro-like protein [Cucumis melo var. makuwa]

1.18e-123

98.9

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTV  G
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

KAA0056622.1 uncharacterized protein E6C27_scaffold288G001420 [Cucumis melo var. makuwa]

2.91e-108

89.5

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLAPIPMIPIQ PYPKWYDSNA CDYHAGG GHSTENCLALKRNVQSLIN GWLSFKK  EKPNVNENPLP+HENPKVN VD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEV+EIVMPMEALF GLF+AGYVS+EY+ PNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQL +S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

KAA0058347.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

1.26e-107

85.64

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYTKLLPQLIQN+QLAPIPMIPIQSPYPKWYDSNA CDYHAGGAGHST+ CLALKR VQSLIN GWLSFK S EKPNVNENPL N ENPKVN VD  VE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        K KNEV+EI+MPMEALF  LFEAGYVS EYL PNIRYE YDES+HCIFHQGVAGHV QQCQKF+SKVQQLM+S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]

1.01e-109

92.27

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLAPIPMIPIQ PYPKWYDSNA CDYHAGG GHSTENC ALKRNVQSLINAGWLSFKKS EKPNVNENPLPNHENPKVN VD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEV+EIVMPMEALF  LFEAGYVSHEYL PNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLM+S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

KAA0066096.1 uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa]

1.45e-106

90.61

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLA IPMIPIQ  YPKWYDSNA CDYHAGG GHSTEN LALKR VQSLIN GWLSFKKS EKPNVNENPLP+HENPKVNVVD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEV+EIVMPMEALF GLFEAGYVSHEYL PNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLM+S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

6.6e-91

90.61

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLA IPMIPIQ PYPKWYDSNA CDYHAGG GHSTENCLALKRNVQSLINAGWLSFKKS EK NV ENPLP+HENPKVNVVD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KC+NEV+EIVMPMEALF GLFEAGYVSHEYL PNIRYEGYDESRHCIFH+GVAGHVVQQCQKFRSKVQQLM+S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

A0A5A7TRL7 Ribonuclease H

3.0e-91

91.16

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLAPIPMIPIQ PYPKWYDSNA  DYHAGG GHSTENCLALKR VQSLINAGWLSFKKS EKPNVNENPLP+HENPKVN VD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEV+EIVMPMEALF GLFEA YVSHEYL PNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLM+S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

A0A5A7ULC1 Uncharacterized protein

8.7e-91

89.5

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLAPIPMIPIQ PYPKWYDSNA CDYHAGG GHSTENCLALKRNVQSLIN GWLSFKK  EKPNVNENPLP+HENPKVN VD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEV+EIVMPMEALF GLF+AGYVS+EY+ PNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQL +S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

A0A5A7V3W7 Retrotrans_gag domain-containing protein

1.9e-93

92.27

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYT+LLPQLIQNRQLAPIPMIPIQ PYPKWYDSNA CDYHAGG GHSTENC ALKRNVQSLINAGWLSFKKS EKPNVNENPLPNHENPKVN VD LVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEV+EIVMPMEALF  LFEAGYVSHEYL PNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLM+S+ILTVYRG
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

A0A5D3BBJ5 Gag-pro-like protein

1.6e-100

98.9

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Query:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
        MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE
Subjt:  MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVE

Query:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG
        KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTV  G
Subjt:  KCKNEVYEIVMPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTTATACAAAGCTTTTACCTCAACTAATTCAAAATCGACAGTTAGCTCCTATTCCAATGATTCCTATACAATCTCCTTACCCAAAATGGTATGATTCAAATGCTGG
ATGTGATTATCATGCTGGAGGAGCAGGACACTCAACTGAAAATTGTTTGGCTTTGAAAAGAAATGTGCAATCTCTAATTAATGCTGGATGGTTGAGTTTCAAAAAATCTG
ATGAGAAGCCGAATGTCAATGAAAATCCACTGCCTAATCATGAAAATCCAAAAGTGAACGTTGTGGATGGTCTTGTTGAAAAGTGCAAAAATGAAGTCTATGAGATAGTG
ATGCCTATGGAAGCACTTTTTGCAGGTCTTTTTGAAGCAGGATATGTTAGTCATGAATATCTAGGCCCCAACATAAGATATGAAGGGTATGATGAAAGCAGACATTGTAT
ATTTCATCAAGGAGTTGCAGGCCACGTTGTCCAGCAGTGCCAAAAATTTAGATCCAAAGTACAACAACTTATGAATTCAGAGATACTCACGGTATATAGAGGATAA

mRNA sequence

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Protein sequence

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MTYTKLLPQLIQNRQLAPIPMIPIQSPYPKWYDSNAGCDYHAGGAGHSTENCLALKRNVQSLINAGWLSFKKSDEKPNVNENPLPNHENPKVNVVDGLVEKCKNEVYEIV
MPMEALFAGLFEAGYVSHEYLGPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMNSEILTVYRG

IVF0020234 (gene) of Melon (IVF77) v1 genome