CuGenDBv2

Gene ID	IVF0020239
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Rho-N domain-containing protein 1
Genome location	chr04:13343988..13344260
RNA-Seq Expression	IVF0020239
Synteny	IVF0020239
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038048.1 rho-N domain-containing protein 1 [Cucumis melo var. makuwa]

3.23e-40

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

KAA0038054.1 rho-N domain-containing protein 1 [Cucumis melo var. makuwa]

3.45e-53

100

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

XP_008447421.1 PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X7 [Cucumis melo]

3.61e-40

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

XP_008447422.1 PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X8 [Cucumis melo]

3.48e-40

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

XP_008447423.1 PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X9 [Cucumis melo]

3.29e-40

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHD7 rho-N domain-containing protein 1, chloroplastic isoform X3

1.2e-32

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

A0A1S3BI08 rho-N domain-containing protein 1, chloroplastic isoform X5

1.2e-32

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

A0A1S3BI13 rho-N domain-containing protein 1, chloroplastic isoform X9

1.2e-32

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

A0A5D3DAG1 Rho-N domain-containing protein 1

1.2e-32

84.44

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA+LR IAKSRSL+GFSKMKKS+L+QLLS  H
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

A0A5D3DAU9 Rho-N domain-containing protein 1

2.6e-40

100

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Query:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
        MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH
Subjt:  MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

SwissProt top hits

e value

%identity

Alignment

Q94K75 Rho-N domain-containing protein 1, chloroplastic

4.1e-06

36.56

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Query:  MEPDEETYDLEHEADEMVPELIN----LLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD
        ++P+  ++  E E D++  ++++    +L V SD D++ +D  +D++E  +    ++L+  KL +LR IAKSR LKG SKMKK++L++LL  D
Subjt:  MEPDEETYDLEHEADEMVPELIN----LLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD

Arabidopsis top hits

e value

%identity

Alignment

AT1G06190.1 Rho termination factor

2.9e-07

36.56

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Query:  MEPDEETYDLEHEADEMVPELIN----LLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD
        ++P+  ++  E E D++  ++++    +L V SD D++ +D  +D++E  +    ++L+  KL +LR IAKSR LKG SKMKK++L++LL  D
Subjt:  MEPDEETYDLEHEADEMVPELIN----LLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD

Sequences

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CDS sequence

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ATGGAACCAGATGAGGAAACATATGATCTAGAGCATGAAGCTGATGAAATGGTGCCTGAACTTATTAATTTGTTAGGCGTGTCATCAGACGTCGATGACACGTTTGAGGA
TGATATTAAAGACACTGAGGAATTTTCAAAGCATGGTGAACATGAGAACTTAAACTCATGGAAACTTGCTAAACTAAGGGTGATTGCTAAATCTCGTAGTTTGAAAGGGT
TTTCGAAGATGAAGAAGAGCAAGCTTATGCAATTGTTAAGCAAAGATCATTGA

mRNA sequence

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Protein sequence

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MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH

IVF0020239 (gene) of Melon (IVF77) v1 genome