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IVF0020259 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020259
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr11:22722661..22723383
RNA-Seq ExpressionIVF0020259
SyntenyIVF0020259
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032477.1 uncharacterized protein E6C27_scaffold500G00010 [Cucumis melo var. makuwa]1.54e-5249.08Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD-------
        M NTRKGNY  HS   V++A VSQ+NMH VRMRGR FKST T+R YH PS+K Q+N  +SS LS+H E +  S A+ VETAP++ ++HISEMD       
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD-------

Query:  --SQIVEKMV------------IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENL-GKKDAPTNK
          ++++ K +            +   HS+ESSS ++I +PTLG P   N+ A QS RSPP++S I VD  V+DQH VP  +P+ ES ENL G   +  N+
Subjt:  --SQIVEKMV------------IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENL-GKKDAPTNK

Query:  NPADADAHVEPTNTCATD
        NP D D HV+PT+TCA D
Subjt:  NPADADAHVEPTNTCATD

KAA0036773.1 uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa]2.45e-5253.11Show/hide
Query:  NMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIV-EKMV---IFKFHSYESSSSKDIFVPTL
        NMH V+MR   FKST  +R Y   SEK Q+N   SSHL V+DEVIVES  +  ETAPS+S+TH ++MD++ V  K V   IF  +S+ESSS +D+F PT 
Subjt:  NMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIV-EKMV---IFKFHSYESSSSKDIFVPTL

Query:  GHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADA-----HVEPTNTCATDT------------TRQSPSE
        GHP  TN  AG SRRSPPI+SSIQVDASV +Q  V K +PID+STEN+G+ D    ++PA A++     HV+PT+TCAT+T            T+QSP  
Subjt:  GHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADA-----HVEPTNTCATDT------------TRQSPSE

Query:  FRPKGKKFQ
         RPKGKK Q
Subjt:  FRPKGKKFQ

KAA0048750.1 uncharacterized protein E6C27_scaffold43G00540 [Cucumis melo var. makuwa]9.03e-5246.99Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKM
        MVNTRK  Y A S   VNEAPVSQSNM+ V MR   FKSTL +R Y   SEK Q+N    S L V+DEVI+E  A+ VETAPS+ KTH + MDS   + +
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKM

Query:  VIFKF---------------------HSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKN
         + +                      H +ES SSKD+FVPT GH   TNE A    RSP ++SSIQVD SV +Q LVP+ +P+DEST+ +G+ D P  K+
Subjt:  VIFKF---------------------HSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKN

Query:  PADA-----DAHVEPTNTCATDT------------TRQSPSEFRPKGKK
        P  A     D HV PT+TCAT+T            T+QS    RP GKK
Subjt:  PADA-----DAHVEPTNTCATDT------------TRQSPSEFRPKGKK

KAA0054676.1 uncharacterized protein E6C27_scaffold24G004970 [Cucumis melo var. makuwa]3.55e-11188.32Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKM
        MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAP                  
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKM

Query:  VIFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT
             HSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT
Subjt:  VIFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT

TYJ98315.1 uncharacterized protein E5676_scaffold232G00330 [Cucumis melo var. makuwa]1.34e-5250.46Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDS------
        MVNTRKGNY  HS   V+EA VSQ+NM   RMRGR FKST T+R YH PS+K Q+N  +SS LS+H E +  S AE VETAP++ ++HISEMDS      
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDS------

Query:  ---QIVEKMV------------IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAP-TNK
           +++ K +            +   HS+ SSS ++I +PTLG P   N+ A QS RSPP++S I VD  V+DQH VP  DP+ ES ENLG   A   N+
Subjt:  ---QIVEKMV------------IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAP-TNK

Query:  NPADADAHVEPTNTCATD
        NP D D HV+PT+TCA D
Subjt:  NPADADAHVEPTNTCATD

TrEMBL top hitse value%identityAlignment
A0A5A7SSZ5 Uncharacterized protein8.9e-4249.08Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD-------
        M NTRKGNY  HS   V++A VSQ+NMH VRMRGR FKST T+R YH PS+K Q+N  +SS LS+H E +  S A+ VETAP++ ++HISEMD       
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD-------

Query:  --SQIVEK------------MVIFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENL-GKKDAPTNK
          ++++ K             ++   HS+ESSS ++I +PTLG P   N+ A QS RSPP++S I VD  V+DQH VP  +P+ ES ENL G   +  N+
Subjt:  --SQIVEK------------MVIFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENL-GKKDAPTNK

Query:  NPADADAHVEPTNTCATD
        NP D D HV+PT+TCA D
Subjt:  NPADADAHVEPTNTCATD

A0A5A7VE22 Gag/pol protein2.3e-4252.05Show/hide
Query:  RMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD---------SQIVEKMV------------IFKFHSYE
        R+RGR+FKST  +R Y  PS+KPQ+N  +SS+L VH E I E VAE VETAPS+S+TH + MD         +++++K +            I   HS+E
Subjt:  RMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD---------SQIVEKMV------------IFKFHSYE

Query:  SSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT------------
        SSS KDIFVPT  H   TNEGAGQS  SP +KSSIQVDASV D  LVP  +PID++TEN+G+ D P +++    DAHVE TNTCATDT            
Subjt:  SSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT------------

Query:  TRQSPSEFRPKGKKFQQNQ
        T+QSP   RPKGKKFQQN+
Subjt:  TRQSPSEFRPKGKKFQQNQ

A0A5D3BIS0 Uncharacterized protein2.6e-4150.46Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDS------
        MVNTRKGNY  HS   V+EA VSQ+NM   RMRGR FKST T+R YH PS+K Q+N  +SS LS+H E +  S AE VETAP++ ++HISEMDS      
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDS------

Query:  ---QIVEKMV------------IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAP-TNK
           +++ K +            +   HS+ SSS ++I +PTLG P   N+ A QS RSPP++S I VD  V+DQH VP  DP+ ES ENLG   A   N+
Subjt:  ---QIVEKMV------------IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAP-TNK

Query:  NPADADAHVEPTNTCATD
        NP D D HV+PT+TCA D
Subjt:  NPADADAHVEPTNTCATD

A0A5D3CAN5 Uncharacterized protein1.6e-8888.32Show/hide
Query:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKM
        MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAP                  
Subjt:  MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKM

Query:  VIFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT
             HSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT
Subjt:  VIFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT

A0A5D3E0G7 Gag/pol protein2.6e-4149.34Show/hide
Query:  PVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD---------SQIVEKMV----------
        P S      +  +GR+FKST  +R Y  PS+KPQ+N  +SS+L VH E I E VAE VETAPS+S+TH + MD         +++++K +          
Subjt:  PVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMD---------SQIVEKMV----------

Query:  --IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT--
          I   HS+ESSS KDIFVPT  H   TNEGAGQS  SP +KSSIQVDAS+ D  LVP  +PID++TEN+G+ D P +++    DAHVE TNTCATDT  
Subjt:  --IFKFHSYESSSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDT--

Query:  ----------TRQSPSEFRPKGKKFQQNQ
                  T+QSP   RPKGKKFQQN+
Subjt:  ----------TRQSPSEFRPKGKKFQQNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACACTCGGAAAGGTAATTATCATGCACATTCGTTCGATGTCGTTAATGAAGCTCCAGTTTCTCAATCTAACATGCATTGTGTGCGGATGAGGGGTCGTCATTT
CAAAAGTACTCTCACACAGAGAATGTATCACCAACCATCGGAAAAACCTCAACTGAATGCCTTTGAAAGCTCTCATTTATCTGTGCATGATGAGGTTATTGTTGAAAGTG
TTGCAGAGTGTGTTGAAACTGCACCGAGTATCTCTAAGACTCATATTTCTGAGATGGATTCTCAAATTGTTGAGAAAATGGTTATTTTCAAATTTCATTCTTACGAAAGC
TCTTCCTCTAAAGATATTTTTGTTCCAACACTTGGTCATCCGTCAGCGACAAATGAAGGAGCTGGTCAATCTAGACGATCTCCACCAATTAAGTCGTCGATTCAAGTTGA
TGCTTCAGTTAATGATCAGCATTTGGTGCCTAAACCTGATCCTATTGATGAATCTACTGAGAATCTAGGTAAGAAGGATGCCCCTACTAATAAGAATCCTGCTGATGCTG
ATGCACATGTTGAACCTACTAATACTTGTGCAACCGATACTACTCGACAATCTCCTAGTGAATTTAGGCCAAAGGGAAAGAAGTTTCAGCAAAACCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAACACTCGGAAAGGTAATTATCATGCACATTCGTTCGATGTCGTTAATGAAGCTCCAGTTTCTCAATCTAACATGCATTGTGTGCGGATGAGGGGTCGTCATTT
CAAAAGTACTCTCACACAGAGAATGTATCACCAACCATCGGAAAAACCTCAACTGAATGCCTTTGAAAGCTCTCATTTATCTGTGCATGATGAGGTTATTGTTGAAAGTG
TTGCAGAGTGTGTTGAAACTGCACCGAGTATCTCTAAGACTCATATTTCTGAGATGGATTCTCAAATTGTTGAGAAAATGGTTATTTTCAAATTTCATTCTTACGAAAGC
TCTTCCTCTAAAGATATTTTTGTTCCAACACTTGGTCATCCGTCAGCGACAAATGAAGGAGCTGGTCAATCTAGACGATCTCCACCAATTAAGTCGTCGATTCAAGTTGA
TGCTTCAGTTAATGATCAGCATTTGGTGCCTAAACCTGATCCTATTGATGAATCTACTGAGAATCTAGGTAAGAAGGATGCCCCTACTAATAAGAATCCTGCTGATGCTG
ATGCACATGTTGAACCTACTAATACTTGTGCAACCGATACTACTCGACAATCTCCTAGTGAATTTAGGCCAAAGGGAAAGAAGTTTCAGCAAAACCAATAG
Protein sequenceShow/hide protein sequence
MVNTRKGNYHAHSFDVVNEAPVSQSNMHCVRMRGRHFKSTLTQRMYHQPSEKPQLNAFESSHLSVHDEVIVESVAECVETAPSISKTHISEMDSQIVEKMVIFKFHSYES
SSSKDIFVPTLGHPSATNEGAGQSRRSPPIKSSIQVDASVNDQHLVPKPDPIDESTENLGKKDAPTNKNPADADAHVEPTNTCATDTTRQSPSEFRPKGKKFQQNQ