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IVF0020308 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020308
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:20022604..20022774
RNA-Seq ExpressionIVF0020308
SyntenyIVF0020308
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036983.1 retrotransposon protein [Cucumis melo var. makuwa]1.83e-1882.61Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM
        MTNCDDID+V+EGDSAY TTTA E IQYIET N+WSQWR ELAEAM
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM

KAA0045949.1 retrotransposon protein [Cucumis melo var. makuwa]6.37e-1874.51Show/hide
Query:  NCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCI
        NCDDID+V+EGDSAY TTT A+ IQYIETTNEWS+WRD+LAEAM    SC+
Subjt:  NCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCI

KAA0046996.1 retrotransposon protein [Cucumis melo var. makuwa]1.44e-33100Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG
        MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG

KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]9.06e-1982.61Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM
        MT CDDID+V+EGDSAY TTTA+E I YIETTNEWSQWRDELAE+M
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM

TYJ97711.1 retrotransposon protein [Cucumis melo var. makuwa]2.60e-1882.61Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM
        MTNCDDID VNE DSAY TTTA E IQYI+TT EWS WRDELAEAM
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM

TrEMBL top hitse value%identityAlignment
A0A5A7TXI7 Retrotransposon protein2.9e-1374.51Show/hide
Query:  NCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCI
        NCDDID+V+EGDSAY TTT A+ IQYIETTNEWS+WRD+LAEAM    SC+
Subjt:  NCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCI

A0A5D3BDZ0 Retrotransposon protein8.5e-1382.61Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM
        MT CDDID+V+EGDSAY TTTA+E I YIETTNEWSQWRDELAE+M
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAM

A0A5D3BY22 Retrotransposon protein6.5e-1377.55Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQN
        MT CDD+D V+EGDS Y TTTA+E IQYIETTNEWSQWRDELAE+M  N
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQN

A0A5D3C2X0 Retrotransposon protein4.8e-24100Show/hide
Query:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG
        MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG
Subjt:  MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG

A0A5D3CT66 Retrotransposon protein1.0e-1376.47Show/hide
Query:  NCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCI
        NCDDID+V+EGDSAY TTT AE IQYIETTNEWS+WRD+LAEAM    SC+
Subjt:  NCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATTGCGACGACATTGACAACGTTAACGAGGGGGACTCCGCGTACGTCACGACCACCGCTGCAGAATACATTCAATACATTGAGACCACAAATGAGTGGTCTCA
ATGGCGCGACGAATTAGCTGAAGCAATGTTACAGAATGATAGTTGCATAACGCTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAATTGCGACGACATTGACAACGTTAACGAGGGGGACTCCGCGTACGTCACGACCACCGCTGCAGAATACATTCAATACATTGAGACCACAAATGAGTGGTCTCA
ATGGCGCGACGAATTAGCTGAAGCAATGTTACAGAATGATAGTTGCATAACGCTTGGTTAA
Protein sequenceShow/hide protein sequence
MTNCDDIDNVNEGDSAYVTTTAAEYIQYIETTNEWSQWRDELAEAMLQNDSCITLG